Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaaccaaacacttctagcatacccgtgtctttatatatatagctgtattattatagaatgtcatctatactttctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAGCCTGAAGCCTGGGAAATATGAGTTGCCTGTGAATAAGGATGACCTTCTT

Basic information

species Vitis vinifera
transcript Vv01s0011g06470.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28965842|gb|CB344875.1|CB344875
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACGAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349813733|gb|FQ413967.1|FQ413967
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATTTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351035169|gb|FQ458526.1|FQ458526
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351048963|gb|FQ449806.1|FQ449806
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|111125105|gb|EE253723.1|EE253723
EST:     ANCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351047337|gb|FQ451849.1|FQ451849
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351053726|gb|FQ441492.1|FQ441492
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349817504|gb|FQ407294.1|FQ407294
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351032689|gb|FQ462403.1|FQ462403
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349822747|gb|FQ398134.1|FQ398134
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|110384776|gb|EC949237.1|EC949237
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351013364|gb|FQ425069.1|FQ425069
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351035143|gb|FQ458500.1|FQ458500
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349812037|gb|FQ410834.1|FQ410834
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCCACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|352794471|gb|FQ481704.1|FQ481704
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAACCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349818630|gb|FQ403265.1|FQ403265
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351032310|gb|FQ461563.1|FQ461563
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349814452|gb|FQ399092.1|FQ399092
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349814016|gb|FQ414250.1|FQ414250
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCCTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349821554|gb|FQ408113.1|FQ408113
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|349814748|gb|FQ409971.1|FQ409971
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
EST: gi|351031264|gb|FQ445289.1|FQ445289
EST:     AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAA                         GAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG
genomic: AGCGATGCACACCATGACCGCGTCCTCCCTGCACTACAAAACACACTCAAgtaataaacc ... ctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttatatatatagctgtattattatagaatgtcatctatactttctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAGCCTGAAGCCTGGGAAATATGAGTTGCCTGTGAATAAGGATGACCTTCTT
                                tcatctatactttctt  CT-rich tract
     tatatatagctgtatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaataaaccaaacacttctagcatacccgtgtctttatatatatagctgtattattatagaatgtcatctatactttctttttctagGAATCTTCAACTGGACTATCTTGATCTCTATCTCATTCATTGGCCGGTAAGCCTGAAGCCTGGGAAATATGAGTTGCCTGTGAATAAGGATGACCTTCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG