Sequence
atgc intronic sequence ATGC exonic sequence...tgcttctttgtctcagtcaatcttctaccattgattatagctatttgtacttttctttatgccaagctgtttactgacaattgctgaattatgatattagACCCCACCCGGATGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCATGATCTAATTCCACCTCGACAAATCAATCCCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g05870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G26900.1 (Glycine max), 3'ss of exon 4
-tgcttctttgtctcagtcaatcttctaccattgattatagctatttgtac-ttttctttatgccaagctgtttactgacaattgctgaattatgatattagACCCCACCCGGATGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCATGATCTAATTCCACCTCGACAAATCAATCCCATG
| ||||| | || |||||| | | | | | | ||| |||| |||| | ||||| |||| | ||| | | || | ||||| || || |||||||||| || ||||| || |||||||||||||||||||| ||||||| | |||||| ||||| |||| || |||||||||
ctaagtctttctttcggtcaatataccatggcaaagcgatggaagagttacatttttaatatgt-gtgatgttttctgattacatttgattcttcatgt-agACCACATCCTAATGAATGTTCAGGAAGTGACTTAGATGGAGATATCTACTTTGTCAGTTGGGACCCTGATCTTATTCCTCCTCATCAGGAAAATCCCATG
upper sequence: Vv01s0011g05870.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G14790.1 (Arabidopsis thaliana), 3'ss of exon 2
-tgcttctttgtctcagtcaatcttctaccattgattatagctatttgtacttttctttatgccaagctgtttactgacaattgctgaattatgatat-tagACCCCACCCGGATGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCATGATCTAATTCCACCTCGACAAATCAATCCCATG
| ||| ||| | | | || || |||| || | | || | | | | || || | || | | || | | | ||| || ||||| |||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || | |||| || || | || |||
gtaaacatttttctatgcttgattcgtgttttt--ttcgagctttt---attgttttaagtctcgaacttttcattggaatcttgtgttcttttgtgcatagGCCACACCCAAATGAATGTTCTGGGAGTGATTTAGATGGAGATATTTACTTTGTATGTTGGGATCAAGAATTGGTTCCGCCAAGAACGTCTGAACCAATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtacttttctttatgccaagctgtttactgacaattgctgaattatgatattagACCCCACCCGGATGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCATGATCTAATTCCACCTCGACAAATCAATCCCATG
tactgac putative branch site (score: 1)
tgaattatgatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcttctttgtctcagtcaatcttctaccattgattatagctatttgtacttttctttatgccaagctgtttactgacaattgctgaattatgatattagACCCCACCCGGATGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCATGATCTAATTCCACCTCGACAAATCAATCCCATG
tgcttct
- - - - tgtctca
- - - - - - - - - - - -tctacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa