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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatttttattctcatcctcccaaattcatagacacataaaatatatatgaatctcatccataccatggaaactttgcagAATGAGTTCCTCAATGGGCACTTCAACAATGTCACGTTCATGTGTGCTGATGTTACTTCTCCTAACCTGGATATTTCACCAGGTTCTGTGGACTTGATTT

Basic information

species Vitis vinifera
transcript Vv01s0011g05220.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G11580.1 (Glycine max), 3'ss of exon 2
-------------------------------------------------------------------gtaaat---ttttattctcatcctccca-aattcatagacacataaaatatatatgaatc-tcatccataccatggaaacttt--gcagAATGAGTTCCTCAATGGGCACTTCAACAATGTCACGTTCATGTGTGCTGATGTTACTTCTCCTAACCTGGATATTTCACCAGGTTCTGTGGACTTGATTT
                                                                     ||||   |   |  |  ||  |   | |||  |  |||  ||| |||     | | |  |    |||  ||   || ||||  |||||||||   | | ||||| |||  ||| ||||||| |||||||||||||||||| |||||||| ||| || |||||||   ||| || || ||  |||| |
gtaataccaatttcttaccacactttgaacactaattaataattatgtttgtctattttttttataaaaaaattggtcccacccatattgtgatataatgtaatgactaatataatgaccttaattggtttctcatctcacataatctttctgcagAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGCATATTTCTGAAGGATCAGTTGATCTGATGT

upper sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G30650.2 (Glycine max), 3'ss of exon 1
----------gtaaatttttattctcatcctcccaaattca-tagacacataa-aatatatatgaatctca----tccataccatggaaactt--tgcagAATGAGTTCCTCAATGGGCACTTCAACAATGTCACGTTCATGTGTGCTGATGTTACTTCTCCTAACCTGGATATTTCACCAGGTTCTGTGGACTTGATTT
           ||| |||||||||  | || |  |||   | |||  |  ||  ||    ||   |||| |      ||| |||    |  ||  ||||||||||   | | ||||| |||  ||| ||||||| |||||||||||||||||| |||||||| ||| || |||||||   ||| || || ||  |||| |
aaatccttgtataattttttattcctacccgctaaaaaaaaatagtgatgtattaacgagtaatgatcttaatttctcatcccacatcattttgatgcagAATGAAAGCATTAATGGACACCACAAGAATGTCAAGTTCATGTGTGCTGATGTCACTTCTCCAAACTTGTATATTTCTGAAGGATCGGTTGATCTGATAT

upper sequence: Vv01s0011g05220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G18000.1 (Arabidopsis thaliana), 3'ss of exon 3
--gtaaatttttattctcatcctc--ccaaattcata--gacacataaaatat-atatg-aatctcatccataccatggaaact--------ttgcagAATGAGTTCCTCAATGGGCACTTCAACAATGTCACGTTCATGTGTGCTGATGTTACTTCTCCTAACCTGGATATTTCACCAGGTTCTGTGGACTTGATTT
   ||    ||||||| | | ||    | |  | ||   |   |||   | || || || |||||    |  |   |  ||  |        ||| |||||||     |||||||||| | ||| ||||||| ||| ||||||||||||||||| || ||| ||||  | ||  |    || ||| | ||||||||||
gtttactactttattcaccttctgagtcgatgttatttcgcttcattgcacatgatttgtaatcttgaactgaatgttaaatttcttctttcttgtagAATGAAAGTATCAATGGGCATTACAAGAATGTCAAGTTTATGTGTGCTGATGTTACATCCCCTGACCTCAAGATCACTGATGGATCTCTTGACTTGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatagacacataaaatatatatgaatctcatccataccatggaaactttgcagAATGAGTTCCTCAATGGGCACTTCAACAATGTCACGTTCATGTGTGCTGATGTTACTTCTCCTAACCTGGATATTTCACCAGGTTCTGTGGACTTGATTT
           ataaaatatatatgaa  TA-rich tract