Sequence
atgc intronic sequence ATGC exonic sequence...gaaaagttagaaacgcttcctataatcactatcaaacgaattctaaatgtggtgattattcctccattatgtgaccttaaatttcttcctcgaattacagCTGTTGGCATTGGGGTTCTGTTAGCAGTAGTTTTCTTCTTCTGCTTTTGGAGGAATTGCAAATCAATCAAACGAACAAAGAACCAACCAAATATTGAGGC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgtggtgattattcctccattatgtgaccttaaatttcttcctcgaattacagCTGTTGGCATTGGGGTTCTGTTAGCAGTAGTTTTCTTCTTCTGCTTTTGGAGGAATTGCAAATCAATCAAACGAACAAAGAACCAACCAAATATTGAGGC
ttctaaa putative branch site (score: 2)
tttcttcctc putative PPT
ttaaatttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaaagttagaaacgcttcctataatcactatcaaacgaattctaaatgtggtgattattcctccattatgtgaccttaaatttcttcctcgaattacagCTGTTGGCATTGGGGTTCTGTTAGCAGTAGTTTTCTTCTTCTGCTTTTGGAGGAATTGCAAATCAATCAAACGAACAAAGAACCAACCAAATATTGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
gaaaagt
- - - - - - -cgcttcc
- - - - - - - - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctcca