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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgacatgcattttctgtggaaattcgtgaaaaaattcttgtatcctgtcaagttatgaatgatgttttgatttttaatttcgaaattagtttagttaataatttgtttttgatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG

Basic information

species Vitis vinifera
transcript Vv01s0011g03380.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03380.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G25860.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaatgacatgcattttctgtggaaattcgtgaaaaaattcttgtatcctgtcaagttatgaatgatgttttg-atttttaatttcgaaa--ttagtttagttaataatttgtttttgatggt---gtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG
         | ||||   |  |  ||| | ||  ||||   || |  |       | |||  |   |   || | ||| |||   | |     |||  | | |   | | | || || | || |    ||||||||| | ||  ||||||||||||| ||||||||||| || | |||||||||    || |||||||| |||||||| ||||| || |
-------gtaagcataagcaat--aaagttgtagaaaatagctagcgtgtgagtgaattaacacacacacttggtattattaggctggtttctttaactgaatgtgtgagtcgtgttggttgttttgatagTTGGATTTGTACTTGTTATCTCAAAAATGGAAAGAGCTGGTGGGGAAAGCTAGAAGCAAGCAACTTCAACCCCATGAATACAACTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29785993|gb|CB343386.2|CB343386
EST:     GGCAATCAATGGTGGGTTGATAACCCCTGTATC-TCAGGATGCTGATAAG                         TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
genomic: GGCAATCAATGGTGGGTTGATAACCCCTGT-TCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
EST: gi|110399056|gb|EC965543.1|EC965543
EST:     TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAG                         TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
genomic: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
EST: gi|26259444|gb|CA810507.1|CA810507
EST:     TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAG                         TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
genomic: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
EST: gi|77583069|gb|DV220571.1|DV220571
EST:     TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAG                         TTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT
genomic: TGGCAATCAATGGTGGGTTGATAACCCCTGTTCTTCAGGATGCTGATAAGgtaaatgaca ... gatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatttttaatttcgaaattagtttagttaataatttgtttttgatggtgtagTTGGATCTCTATCTGTTATCTCAAAAGTGGAAAGAGCTTGTAGAGAAAGCTAGGGCAAAACAACTTCAGCCCCATGAGTACAATTCAG
     tttttaatttcgaaat  TA-rich tract