1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atttctgttttttgcatatctaccatcatgttatataatcaagttcagtatttgtcttctcatctgcttctgaagattttgtaatttatcttcacctcagATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAAGTTATTAGAGCCCCAGGAATGCATTGCACGTATTCTCCCTGTTATTAT
species | Vitis vinifera |
transcript | Vv01s0011g03280.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATG ATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAEST: gi|30303369|gb|CB980163.1|CB980163
genomic: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATGgtaattgaat ... ttcacctcagATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCA
EST: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATG ATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAEST: gi|110724591|gb|EE100555.1|EE100555
genomic: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATGgtaattgaat ... ttcacctcagATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCA
EST: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATG ATCAAGATTCAGTCAAGTTATTGGTTGGTTGAGGGTTGTGCCACACTGGGCEST: gi|71884162|gb|DT033217.1|DT033217
genomic: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATGgtaattgaat ... ttcacctcagATCAAGATTCAGTCAGGTTATTGGTTG-TTGAGGGTTGTGCCACACTGGGC
EST: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATG ATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCA
genomic: TCATTTGAAGAATGACATCATGACAATATTTGAAAATCTTACACAGGATGgtaattgaat ... ttcacctcagATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCA
cagtatttgtcttctcatctgcttctgaagattttgtaatttatcttcacctcagATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAAGTTATTAGAGCCCCAGGAATGCATTGCACGTATTCTCCCTGTTATTAT
tttatcttcacctc CT-rich tract
aagattttgtaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttctgttttttgcatatctaccatcatgttatataatcaagttcagtatttgtcttctcatctgcttctgaagattttgtaatttatcttcacctcagATCAAGATTCAGTCAGGTTATTGGTTGTTGAGGGTTGTGCCACACTGGGCAAGTTATTAGAGCCCCAGGAATGCATTGCACGTATTCTCCCTGTTATTAT
- - - - -ttttgca
- - - - - - - - - - -accatca