Sequence
atgc intronic sequence ATGC exonic sequence...tgtgttacttgccctctcaaacatatagacacacattctgaggatagtggaatgagaacaatcactcttctgattttctctttgtactcttcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTGAAGTTGGTATGGAATCTCCCAGAAGTTATGAGAGTGGCATATGCATTCATGCTGGTCATGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G21270.1 (Glycine max), 3'ss of exon 2
---tgtgttacttgccctctcaaacatatagacacacattctgaggatagtggaatgaga-acaatcactcttctgattttctctttgtactcttcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTGAAGTTGGTATGGAATCTCCCAGAAGTTATGAGAGTGGCATATGCATTCATGCTGGTCATGCTT
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tattgtagt-ctgatttcttcatgcttgtctttttgctttctgt--ataattaagtgcgttgtaaaaatgattatctatggctctttat-tttttcttctgtagACTTCCATTTACAATGTTGGTTCTGCAAAAGGCTGTCAAGATGGTATGGAATATTCCTGAAGTTATGAGAGTAGCATATGCATTTATGCTTGTTGTGCTT
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G42290.1 (Glycine max), 3'ss of exon 2
tgtgttacttgccctctcaaacatatagaca--cacattctgaggatagtggaatgagaacaatcactcttctgattttctctttgtactcttcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTGAAGTTGGTATGGAATCTCCCAGAAGTTATGAGAGTGGCATATGCATTCATGCTGGTCATGCTT
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--ttctaattttgtggttaagtttttctgcagcttctttttagcctttgtataattgattgagtccataagatggtctcttgtggcttcttttcttctgcagACTTCCATTTACGATGTTGGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAATATTCCCGAGGTTATGAGAGTGGCATATGCATTTATGTTTGTCGTGCTT
upper sequence: Vv01s0011g03220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G24760.1 (Glycine max), 3'ss of exon 2
tgtgttacttgccctctcaaacatatagacacacattctgaggata--gtggaatgagaacaatcactcttctgattttctctttgtactcttcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTGAAGTTGGTATGGAATCTCCCAGAAGTTATGAGAGTGGCATATGCATTCATGCTGGTCATGCTT
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--ttctaatttgtggttaagtttttctgctgcttcttttcagctttttgtataattgattgagtccataagatggtctcttgtggcttcttttattctccagACTTCCATTTACGATGTTGGTTCTGCAAAATGCTGTGAAGATGGTTTGGAATATTCCTGAGGTTATGAGAGTGGCATATGCATTTATGTTTGTCGTGCTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715753|gb|FC066157.1|FC066157EST: GCTATTGGCGCTGCTCTGCAATTCTTGTATGTCATATCGGTTATGGATAG ACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTG
genomic: GCTATTGGCGCTGCTCTGCAATTCTTGTATGTCATATCGGTTATGGATAGgtaatgatac ... tcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtggaatgagaacaatcactcttctgattttctctttgtactcttcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTGAAGTTGGTATGGAATCTCCCAGAAGTTATGAGAGTGGCATATGCATTCATGCTGGTCATGCTT
ttctgat putative branch site (score: 3)
tcactcttctgatttt CT-rich tract
tgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtgttacttgccctctcaaacatatagacacacattctgaggatagtggaatgagaacaatcactcttctgattttctctttgtactcttcttctatagACTTCCATTTAGCATGCTGGTGCTCCAAAAAGCTGTGAAGTTGGTATGGAATCTCCCAGAAGTTATGAGAGTGGCATATGCATTCATGCTGGTCATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - -ccctctc
- - - - - - - - - aaacata
- - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - agaacaa