1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCTTCCACCCTTTCAAGAGAGACAAGGCAGTTGGCACCAACCCAACATCGG
species | Vitis vinifera |
transcript | Vv01s0011g03110.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAG GACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCEST: gi|161720667|gb|FC070611.1|FC070611
genomic: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacat ... gttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
EST: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAG GACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCEST: gi|161719475|gb|FC067685.1|FC067685
genomic: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacat ... gttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
EST: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAG GACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
genomic: TTAGATCTGTTCAGTTGTGGAACCAGACCCCAGATCCACCCGTCAAAGAGgtacccacat ... gttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCC
aatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCTTCCACCCTTTCAAGAGAGACAAGGCAGTTGGCACCAACCCAACATCGG
aactaaa putative branch site (score: 2)
tttatttcaactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacccacatgaacaaaatttctaacattttgaaattttagctcctctctaatcctacattttttttttctcagagatcaaacaaggaataatggtttatgttttggtttatttcaactaaattttggaaaatttgttgttgtagGACACACCCAAGAAGATACCATCTATGGAGGTGAAGAAAAATGGCGGTGCCTTCCACCCTTTCAAGAGAGACAAGGCAGTTGGCACCAACCCAACATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA