Sequence
atgc intronic sequence ATGC exonic sequence...aagagtgtatttgtatttcttttctatttatttatgttatcacattaatgtaatttgttaaacactgaagatttctttctttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G17050.1 (Glycine max), 3'ss of exon 2
aagagtgtatttgtatttcttttctatttatttatgttatcacattaatgtaatttgttaaacactgaagatttctttc-tttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG
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-aaactttgtttagatcatctgtgtcgaaatgttgaatgatttatgcccatattataccagaatcagatcatctgagacatctgtcttaatttttttgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG
upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G11300.2 (Glycine max), 3'ss of exon 2
-aagagtgtatttgtatttcttttctatttatttatgttatcacattaatgtaatttgttaaacactgaagatttctttctttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG
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atcttgtttagatgttactgtgtgtaaatgttttatgat-ttatgtccatattatacaagaatcagatcagctgagacatctgtcttaattttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG
upper sequence: Vv01s0011g02820.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G11320.2 (Glycine max), 3'ss of exon 2
aagagtgtatttgtatttcttt-tctatttatttatgttatcacattaatgtaatttgttaaacactgaagatttctttctttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG
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-atcttgtttagatgttactgtgtgtaaatgttttctgatttatgtccatattatacaagaatcagatcagctgagacatctgtcttaattttttctgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAACAATGACCCAGCTATTATTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgtaatttgttaaacactgaagatttctttctttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG
tttctttctttttttg CT-rich tract
atttctttcttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagagtgtatttgtatttcttttctatttatttatgttatcacattaatgtaatttgttaaacactgaagatttctttctttttttgatcatctttgcagGATTTGCAGGTTAAGTCTTCACCTCCTGTTCAGGCTACACCACCTATAAACAATGACCCTGCTATTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaacac