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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcccttggtgaactcgcatctattggggttacgttcaattaattttgatttttgggagctgaatttgcttggatcttatttccgtatgatttattttttattagatttatttctgtgtgatttcatattctctgcttttaaatgctgattcatgttacttattggacgctcaatttcagGAGACTACAAATATGTCAG

Basic information

species Vitis vinifera
transcript Vv01s0011g02070.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730534|gb|EE107722.1|EE107722
EST:     GTTGAGCTTGCTGCACTTCTCCATGACATAG                         GAGACTACAAATATGTCAG
genomic: GTTGAGCTTGCTGCACTTCTCCATGACATAGgtaatccctt ... tcaatttcagGAGACTACAAATATGTCAG
EST: gi|294965477|gb|GW839048.1|GW839048
EST:     GTTGAGCTTGCTGCACTTCTCCATGACATAG                         GAGACTACAAATATGTCAG
genomic: GTTGAGCTTGCTGCACTTCTCCATGACATAGgtaatccctt ... tcaatttcagGAGACTACAAATATGTCAG
EST: gi|110415762|gb|EC981694.1|EC981694
EST:     GTTGAGCTTGCTGCACTTCTCCATGACATAG                         GAGACTACAAATATGTCAG
genomic: GTTGAGCTTGCTGCACTTCTCCATGACATAGgtaatccctt ... tcaatttcagGAGACTACAAATATGTCAG
EST: gi|37190640|gb|CF609989.1|CF609989
EST:     GTTGAGCTTGCTGCACTTCTCCATGACATAG                         GAGACTACAAATATGTCAG
genomic: GTTGAGCTTGCTGCACTTCTCCATGACATAGgtaatccctt ... tcaatttcagGAGACTACAAATATGTCAG
EST: gi|161706694|gb|FC055885.1|FC055885
EST:     GTTGAGCTTGCTGCACTTCTCCATGACATAG                         GAGACTACAAATATGTCAG
genomic: GTTGAGCTTGCTGCACTTCTCCATGACATAGgtaatccctt ... tcaatttcagGAGACTACAAATATGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattctctgcttttaaatgctgattcatgttacttattggacgctcaatttcagGAGACTACAAATATGTCAG
                  tgctgat  putative branch site (score: 3)
           ttttaaat  TA-rich tract