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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggcacattcccaggtctccttgtttggtagctgagaaaaccaaggaaaagaagtatttcataattctggtttcgtttcagGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATGTTACCTATAAAGGGCTCACCGACTTGGTGACTGA

Basic information

species Vitis vinifera
transcript Vv01s0011g01800.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01800.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G25880.1 (Glycine max), 3'ss of exon 1
gtttggcacattcccaggtctccttgtttggtagctgag-aaaaccaaggaaaagaagtat---------ttcata-----attctggtttcg----tttcagGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATGTTACCTATAAAGGGCTCACCGACTTGGTGACTGA
  ||      ||   |  | |   |||||  ||||| |  || |    || |    | |||         ||||||     |||     | ||    || |||||||||||||||||||||||||||||||||||| |||| ||||||||  | || ||||| ||||||||
aattatagagtttttaaattt---tgttttatagctaaataagattttggcatgccactatcttcaattcttcatatggatattacacctccgttatttacagGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtagctgagaaaaccaaggaaaagaagtatttcataattctggtttcgtttcagGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATGTTACCTATAAAGGGCTCACCGACTTGGTGACTGA
                                            tttcgtttc  CT-rich tract
                         aagtatttcataatt  TA-rich tract