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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctctttttgtttattttttatgttttctttttggtcatgattctgaagatgttgagcggatgttgtttacaattgtttttcagGCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCCTTGGAAATGGCCTCCAAAGTTTAGG

Basic information

species Vitis vinifera
transcript Vv01s0011g01460.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705728|gb|FC056214.1|FC056214
EST:     GGCGGACACCATTTCGATTCTGAAGGCTCAGTCTCAGTCCAATGCTTCGG                         GCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCC
genomic: GGCGGACACCATTTCGATTCTGAAGGCTCAGTCTCAGTCCAATGCTTCGGgtgctctttt ... tgtttttcagGCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCC
EST: gi|110726021|gb|EE103088.1|EE103088
EST:     GGCGGACACCATTTCGATTCTGAAGGCTCAGTCTCAGTCCACTGCTTCGG                         GCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCC
genomic: GGCGGACACCATTTCGATTCTGAAGGCTCAGTCTCAGTCCAATGCTTCGGgtgctctttt ... tgtttttcagGCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggtcatgattctgaagatgttgagcggatgttgtttacaattgtttttcagGCAACAAGCAAGCTTTGATTTCGTTGTCCGACAAAAAGGATCTAGCTTTCCTTGGAAATGGCCTCCAAAGTTTAGG
                                            ttgtttttc  CT-rich tract
                                     tttacaattgttttt  TA-rich tract