1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atccccagtcttgatagatgagatagctaatctattattgttgttgggatcttaagtttatcagcaaccactgtcaggactgatttcatgcatctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCATGCTTGCTG
species | Vitis vinifera |
transcript | Vv01s0011g00930.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|30298919|gb|CB975713.1|CB975713
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|22013355|gb|BQ798389.1|BQ798389
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|349827180|gb|FQ421453.1|FQ421453
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|351024975|gb|FQ433392.1|FQ433392
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|349815365|gb|FQ400520.1|FQ400520
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|110428480|gb|EC994954.1|EC994954
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|110398543|gb|EC964979.1|EC964979
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|26265214|gb|CA816277.1|CA816277
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|110421011|gb|EC987298.1|EC987298
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|349830135|gb|FQ420395.1|FQ420395
genomic: GGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCCGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCEST: gi|110726886|gb|EE103061.1|EE103061
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCC
EST: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAG GTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGGTGATGGGGTTCCCCC
genomic: GCAGCTATGATCGTGGAAAGCCTCTTACATTTCGTATTGGTGTGGGTGAGgtaagtacct ... catctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGG-TGATGGGGTTCCCCC
gggatcttaagtttatcagcaaccactgtcaggactgatttcatgcatctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCATGCTTGCTG
gactgat putative branch site (score: 3)
ttaagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccccagtcttgatagatgagatagctaatctattattgttgttgggatcttaagtttatcagcaaccactgtcaggactgatttcatgcatctcacagGTCATTAGAGGCTGGGACCAGGGGATTCTAGGAGGTGATGGGGTTCCCCCCATGCTTGCTG
atcccca
- - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcatg