1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gggatctcttgggttggaaaaaaatcttgttagctagttatatagcagataaattggatttgtattgaaaaaagattaattttattcacacattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGAACGCTCCTCGGAGGATCCCAGCATCGTAATCACTACATATGAAGGCCAA
species | Vitis vinifera |
transcript | Vv01s0011g00720.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAGAATAGTCCTTTTCCTAG GAGCTATTACCGGTGCACATACAGCAAATGCACGGAGAAGAAAAGAGTTGAEST: gi|37184818|gb|CF604172.1|CF604172
genomic: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggct ... cattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGA
EST: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAG GAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGAEST: gi|110700249|gb|EE078069.1|EE078069
genomic: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggct ... cattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGA
EST: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAG GAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAAGAATAGAGTTGEST: gi|110359459|gb|EC920976.1|EC920976
genomic: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggct ... cattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAA-GAAAAGAGTTG
EST: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAG GAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGA
genomic: CGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggct ... cattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGA
cagataaattggatttgtattgaaaaaagattaattttattcacacattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGAACGCTCCTCGGAGGATCCCAGCATCGTAATCACTACATATGAAGGCCAA
gattaat putative branch site (score: 3)
aaattggatttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggatctcttgggttggaaaaaaatcttgttagctagttatatagcagataaattggatttgtattgaaaaaagattaattttattcacacattttgcagGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGAACGCTCCTCGGAGGATCCCAGCATCGTAATCACTACATATGAAGGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - gggttgg
- - - - - - - - gaaaaaa
- - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - agataaa