1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtattgcaattctactattgattaggaagtcttgttggttcctaaatttgtaaggttcatttcatcttattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG
species | Vitis vinifera |
transcript | Vv01s0011g00550.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTEST: gi|110361486|gb|EC924960.1|EC924960
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: AAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTEST: gi|110430267|gb|EC996810.1|EC996810
genomic: AAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: TTATCACCAAGTAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGEST: gi|349808731|gb|FQ406581.1|FQ406581
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTG
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGGGGAGGCTGGTTTEST: gi|352786080|gb|FQ481875.1|FQ481875
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTEST: gi|351042817|gb|FQ434379.1|FQ434379
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTEST: gi|351054615|gb|FQ456812.1|FQ456812
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTEST: gi|349829486|gb|FQ420018.1|FQ420018
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTEST: gi|349830592|gb|FQ416890.1|FQ416890
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
EST: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAG CTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
genomic: TTATCACCAAGCAAGACAAGTCCAGTGGTTCTCCTCCATGGTTTTGACAGgtttgtattg ... tattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTT
taggaagtcttgttggttcctaaatttgtaaggttcatttcatcttattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG
tcctaaa putative branch site (score: 2)
tttcatcttattcttc putative PPT
taaatttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtattgcaattctactattgattaggaagtcttgttggttcctaaatttgtaaggttcatttcatcttattcttcagCTCCTGTTTAGAATGGAGATACACATATCCGCTGCTCGAGGAGGCTGGTTTAGAGACATGGGCTGTTGACATTCTTGGTTGGGGCTTCTCTGATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT