1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgattcatcatacttttattgtaaattttagctagagtggtcaataccaatatgcccattgagctttttcacttatcattctgttcattctctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAACGAACTCAGAG
species | Vitis vinifera |
transcript | Vv01s0011g00110.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAG AACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAAEST: gi|110694126|gb|EE070958.1|EE070958
genomic: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGgtatctcgtt ... tctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAA
EST: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAG AACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAAEST: gi|110690068|gb|EE066845.1|EE066845
genomic: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGgtatctcgtt ... tctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAA
EST: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAG AACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAAEST: gi|71860449|gb|DT009504.1|DT009504
genomic: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGgtatctcgtt ... tctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAA
EST: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAG AACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAA
genomic: GATGCAGTTACAGTGCACTGGAAGCCAGCCAACCTGCAAAGGAGACACAGgtatctcgtt ... tctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAA
accaatatgcccattgagctttttcacttatcattctgttcattctctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAACGAACTCAGAG
ttctgttcattctctc CT-rich tract
ttatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattcatcatacttttattgtaaattttagctagagtggtcaataccaatatgcccattgagctttttcacttatcattctgttcattctctcaagcagAACAGTTACCAGGAATATCTGAAACTAAAATCAAAGGTCGAGGTCCTGCAACGAACTCAGAG
- - - - - - - - - - - - - - - - - - - - - -ataccaa
- - - - - - - - - - - - - - - - - - - - - - - - - tatgccc