1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttgtcttcaactctttgattatttgatttgatttgattctattttattttacaaaatttgtttttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCAGTTGGTCAAATGGGAGGCTAAGGTTGAAGAAGATCTCGATAAGTTGCT
species | Vitis vinifera |
transcript | Vv01s0010g03830.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCEST: gi|110392482|gb|EC957934.1|EC957934
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCEST: gi|27586450|gb|CB009145.1|CB009145
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCGGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCGTGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAACCEST: gi|110402841|gb|EC963595.1|EC963595
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCEST: gi|33408889|gb|CF214516.1|CF214516
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCEST: gi|110409821|gb|EC975493.1|EC975493
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCEST: gi|110694543|gb|EE071739.1|EE071739
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCEST: gi|110721737|gb|EE097352.1|EE097352
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
EST: CTCGGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGC ATCCGTGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAACC
genomic: CTCAGTCCAGTTGCACTCCAATGCTCTTCGGAAACTCCCTCTCATGAGGCgtgagttgtc ... ttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATC
ttatttgatttgatttgattctattttattttacaaaatttgtttttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCAGTTGGTCAAATGGGAGGCTAAGGTTGAAGAAGATCTCGATAAGTTGCT
ttttgat putative branch site (score: 4)
tttgttttt CT-rich tract
atttgatttgattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgtcttcaactctttgattatttgatttgatttgattctattttattttacaaaatttgtttttgatttcagATCCATGGGAGCACGTGTTGGCGATTGGAATTGGGGCTGTTTTTGGGAATCAGTTGGTCAAATGGGAGGCTAAGGTTGAAGAAGATCTCGATAAGTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG