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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgcccttttttttttttcctcattcattcctcttgttctttgtagctctataaatgatcatctgtttggcgtattttttcagGTGAAGTACTCCAGAGAGCCAGACAATCCCACCAAGT

Basic information

species Vitis vinifera
transcript Vv01s0010g03370.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G01110.1 (Glycine max), 3'ss of exon 1
-----gtagtgcccttttttttttttcctca--ttcattcctcttg---ttctttgtagctctataaatgatcatctgtttggcgtattttttcagGTGAAGTACTCCAGAGAGCCAGACAATCCCACCAAGT
      ||    |         |  | ||||  ||  |||||||     |  ||| ||| |||   || | |  || ||||    | |||| ||||||||||||||||||||| || ||||||||||||||||
gtaggttaccaacaccaaacaatgcttctcagtttttttcctctgaacttcgtttttagttctcataacgctgttccgttt--tctcttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT

upper sequence: Vv01s0010g03370.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37160.1 (Glycine max), 3'ss of exon 1
---------------------gtagtgcccttttttttttttcctcattcattcctcttgt-tctttgtagctctataaatgatcatctgtttggcgtattttttcagGTGAAGTACTCCAGAGAGCCAGACAATCCCACCAAGT
                      |  | | |   |||||  |     ||||  |  |    | || | ||| | || |   |  |  ||| |||    | |||| ||||||||||||||||||||| || ||||||||||||||||
gtaagtaaccggcaccaaacaatgattctcagctttttcctctgaaattcgctttttagatctcatagtaacgctgtt--tcgttttctcttt--tttcttttctcagGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcttgttctttgtagctctataaatgatcatctgtttggcgtattttttcagGTGAAGTACTCCAGAGAGCCAGACAATCCCACCAAGT
                                            tattttttc  CT-rich tract
                     tataaatgat  TA-rich tract