Sequence
atgc intronic sequence ATGC exonic sequence...tctgttcagggttgttttctgcatttttttttctaacaaacagaaaaaaggaacagaattgctaacttacaaagtagaaattttatttcttggttaacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: 13114.m00153 (Oryza sativa), 3'ss of exon 5
tctgttcagggttgttttctgcatttttttttctaacaaacagaaaaaaggaacagaattgc--taacttacaaagtagaaattttatttcttggttaacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG
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--tcctcgtggtttattaatttatccactttcagtaaaatcaattgcctgtctcccttttgacataaagattgatttagttccacttttccttgcctatcagGAGGCAAGTTCTTCCAGCTGTTCCACACCTTTTAGAAACTGTACAG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G461569_T02 (Zea mays), 3'ss of exon 2
---tctgttcagggttgttttctgcatttttttttctaacaaacagaaaaaaggaacagaattgctaacttacaaagtagaaattttatttcttggttaacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG
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tcttgcgtttctgtatattgtcttcatgtagttcacttgc---tgtgatataatcatatagcccttaagctctgatagttttttcttttcgtttgcctaccagGAGACAAGTTCTTCCAGCTGTTCCATACCTTTTACATACTGTGCAG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G461569_T03 (Zea mays), 3'ss of exon 2
---tctgttcagggttgttttctgcatttttttttctaacaaacagaaaaaaggaacagaattgctaacttacaaagtagaaattttatttcttggttaacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG------------------------------------------------------
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tcttgcgtttctgtatattgtcttcatgtagttcacttgc---tgtgatataatcatatagcccttaagctctgatagttttttcttttcgtttgcctaccagGAGACAAGTTCTTCCAGCTGTTCCATACCTTTTACATACTGTGCAGGTGTTCTTTGCTCATAGTATATAATACTTACTACTTTCATCCATATGCATCCAG
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37250.1 (Glycine max), 3'ss of exon 3
---------------------------------------------tctgttcagggttgttttctgcatttttttttctaacaaa---------cagaaaaaaggaacaga------attgctaacttacaa-agtagaaattttatttcttggtt--aacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG
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gtattgtgtcaattttcattgtctggttctgttgctctatgctctttaattgattatttgttttttctctctttaatttgatatgattctgccctagaaaagaggaacgaaccgtttttttttagtttataatagatataaatttatcttcaaattttaacagGAAACAAGTTCTTCCAGCTGTTCCTCATCTTGTTGAAAGTGTTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaggaacagaattgctaacttacaaagtagaaattttatttcttggttaacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG
ttttatttctt CT-rich tract
ttacaaagtagaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctgttcagggttgttttctgcatttttttttctaacaaacagaaaaaaggaacagaattgctaacttacaaagtagaaattttatttcttggttaacagGAGACAAGTTCTTCCAGCTGTTCCACACCTCTTGCATACTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - gggttgt
- - - - - - - - - ctgcatt
- - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - aacagaa
- - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtagaaa