1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttattgtttgattagttcttcatcttattcatgttaatgaatatttgcccatagtgtcaatagcttggtgagtccttatgttcaagaattctgtggcagGTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
species | Vitis vinifera |
transcript | Vv01s0010g02580.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGCTTTGGAGGATCAATGTTTGCAATATCATTGGTCATAGCATGCGTT GTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAGEST: gi|110368792|gb|EC932867.1|EC932867
genomic: AAGGCTTTGGAGGATCAATGTTTGCAATATCATTGGTCATAGCATGCGTTgtatgatctc ... tctgtggcagGTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
EST: AAGGCTTTGGAGGATCAATGTTTGCAATATCATTGGTCATAGCATGCGTT GTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAGEST: gi|110388647|gb|EC953420.1|EC953420
genomic: AAGGCTTTGGAGGATCAATGTTTGCAATATCATTGGTCATAGCATGCGTTgtatgatctc ... tctgtggcagGTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
EST: AAGGCTTTGGAGGATCAATGTTTGCAATATCATTGGTCATAGCATGCGTT GTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
genomic: AAGGCTTTGGAGGATCAATGTTTGCAATATCATTGGTCATAGCATGCGTTgtatgatctc ... tctgtggcagGTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
ttgcccatagtgtcaatagcttggtgagtccttatgttcaagaattctgtggcagGTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattgtttgattagttcttcatcttattcatgttaatgaatatttgcccatagtgtcaatagcttggtgagtccttatgttcaagaattctgtggcagGTTATGTATGACGCATTTGGTGTGAGATTACAGGCTGGACGTCAAGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - aatgaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagaa