Sequence
atgc intronic sequence ATGC exonic sequencegtatgaacattaaaataaacggattgaattgtagtttatttaattttctgttgaatttttagatttatgtttgggttgggaaagtgattttgatgggaaagaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37380.1 (Glycine max), 3'ss of exon 2
gtatgaacattaaaa--taaacggattgaattgtagtttatttaattttctgttgaatttttagatttatgtttg-ggttgggaaa---gtgattttgatgggaa----------agaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
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gtttgatccttgtgtcctgcattttttaaattttttttattttgggccttatttttcgcattgcaattatgtatgtggccggaaaaattgtgatatttataagtatttgaatttgggaatttgatcagCATTCTTTACAACCGTGGAGTTTATCCAGAAGAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACT
upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37380.3 (Glycine max), 3'ss of exon 2
gtatgaacattaaa--ataaacggattgaattgtagtttatttaattttctgttgaatttttagatttatgtttg-ggttgggaaa---gtgattttgatgggaa----------agaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG-----------------------------
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gtttgatccttgtgtcctgcattttttaaattttttttattttgggccttatttttcgcattgcaattatgtatgtggccggaaaaattgtgatatttataagtatttgaatttgggaatttgatcagcattctttacaaccgtggagtttatccagAAGAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTC
upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G34480.1 (Glycine max), 3'ss of exon 1
gtatgaacattaaaataaacggattgaattgtagtttatt-taattttctgttgaatttttagatttatgtttgggttgggaaagtgattttgatgggaaagaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG--------------------
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--------------------------tatttttttgcattgcaattatgcatgtggctggaaaatttgtgat---atttataagt--attttaatatgata--atttgatcaacattctctacaaccgtggagTTTATCCAGAAGAAAGCTTTGTGAAAGTTAAGAAATATGGCCTCCCCATGTTGCTAACGGAAGATGAGGGTGTCAAATCTTTTCTAGCAAATCTAACCGC
upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G01350.1 (Glycine max), 3'ss of exon 2
gtatgaacattaaaataaacggattgaattgtagtttatttaattttctgttgaatttttag------atttatgtttg-ggttgggaaag---tgattttgatgggaa----------agaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
|| ||| | | | || ||| | |||| || ||| | || |||||| | | ||||| || || ||| |||| |||| || || | | ||| || |||| ||||| ||||| || ||||||||||| |||||| |||| || || |||||||||||||| || ||| |||| || ||||||||||||| |||||
gtttgatcctcgtgtcctgcattttttatttt--tttaatttattatgggtcttattttttgcattgcaattatgcatgtggctggaaaagttgtgatatttataagtattttaatatgggaatttgatcagCATTCTCTACAACCGTGGAGTTTATCCAGAAGAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTAACGGAAGATGAGGGTGTCAAATCT
upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G25980.2 (Arabidopsis thaliana), 3'ss of exon 1
gtatgaacattaaaataaacggattgaattgtagtttatttaattttctgttgaatttttagatttatgtttgggttgggaaagtgattttgatgggaaagaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
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---tgagaattggatcggaacttttcaatttcagtgtctggaaatcttcg----attctgtgatttttttacagt----gaaattgattc-gttattggtttctgggtacagTATATTGTATAATCGTGCAGTTTATCCAGAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAATCCGTCAAATCT
upper sequence: Vv01s0010g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G25980.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgaacattaaaataaacggattgaattgtagtttatttaattttctgttgaatttttagatttatgtttgggttgggaaagtgattttgatgggaaagaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
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--gtgagaattggatcggaacttttcaatttcagtgtctggaaatcttcg----attctgtgatttttttacagt----gaaattgattc-gttattggtttctgggtacagTATATTGTATAATCGTGCAGTTTATCCAGAGGAAAGTTTTGTGAAAGTGAAGAAATATGGACTTCCGATGTTGCTTATTGAAGATGAATCCGTCAAATCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349818528|gb|FQ403163.1|FQ403163EST: AATTTTTTGGTTATGCTGCAAACAG TATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAA
genomic: AATTTTTTGGTTATGCTGCAAACAGgtatgaacat ... aaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttagatttatgtttgggttgggaaagtgattttgatgggaaagaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
ttttgat putative branch site (score: 4)
atttatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaacattaaaataaacggattgaattgtagtttatttaattttctgttgaatttttagatttatgtttgggttgggaaagtgattttgatgggaaagaaaatgttcagTATTCTATACAATCGCGGAGTTTATCCGGAAGAATCTTTTGGAAAAGTGAAGAAATATGGCCTTCCAATGCTGCTTACTCAAGATGAGGGTGTTAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG