Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgggaaaatgatttaaactgacatgttattcatatttggttgtttttctttttatgtttatttctcaatgttgccttctttaccttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGATGAAGTACGGCCTCCATTACCGGTGATAAGGGAGGCTCTTTATGACGAT

Basic information

species Vitis vinifera
transcript Vv01s0010g02050.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859632|gb|DT008687.1|DT008687
EST:     TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAG                         TGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
genomic: TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGgtatgttggg ... cttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
EST: gi|161719853|gb|FC068673.1|FC068673
EST:     TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAG                         TGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
genomic: TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGgtatgttggg ... cttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
EST: gi|71858118|gb|DT007173.1|DT007173
EST:     TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAG                         TGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
genomic: TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGgtatgttggg ... cttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
EST: gi|110732429|gb|EE107710.1|EE107710
EST:     TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAG                         TGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
genomic: TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGgtatgttggg ... cttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
EST: gi|71858246|gb|DT007301.1|DT007301
EST:     TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAG                         TGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA
genomic: TATTCTCCACCAATTGAAAATATTAGTCCCCTGCCTGATCAAAGTTCAAGgtatgttggg ... cttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtttttctttttatgtttatttctcaatgttgccttctttaccttggctcagTGGATCAAGAAAGGACATTGAAAATGAAAATGTTGTACAAGATGATGGAGATGAAGTACGGCCTCCATTACCGGTGATAAGGGAGGCTCTTTATGACGAT
                                ttgccttctttacctt  CT-rich tract
     ttttctttttatgttt  TA-rich tract