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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatctaagttcataattcatactttgtgctatggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG

Basic information

species Vitis vinifera
transcript Vv01s0010g01740.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349816624|gb|FQ399613.1|FQ399613
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|349823327|gb|FQ402526.1|FQ402526
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|161718299|gb|FC064760.1|FC064760
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|294965642|gb|GW837241.1|GW837241
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCCCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
EST: gi|349809177|gb|FQ398950.1|FQ398950
EST:     TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGG                         TTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG
genomic: TTGGACCACGCAGAAGGTGTTCCACTTTCTCAATTTCCTGGTGAATGGGGgtttgtatct ... cgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggattataatcttttgtgtatttttattgaatatggtctcatgcgttctgcagTTAGATCACTAGTTTTTGTGTTCCGCAGAAATGTGCAGCGCCTGCATCCAGAG
     ttataatcttttgtgt  TA-rich tract