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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgatgtgagattggtgagcagctctttctttttcttttatactcttttcttgtgtagtgtattttcaaaaaccattgttatgcatttggctttcttatatgctatgtggtagcagTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGG

Basic information

species Vitis vinifera
transcript Vv01s0010g01410.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G11060.1 (Glycine max), 3'ss of exon 2
gtctgtgatgtgagattggtgagcagctctttctttttcttttatactcttttcttgtgtagtgtattttcaaaaaccattgttatgcatttggctttcttatatgctatgtggtagcagTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGG
||||||||| ||| |||||||||||||||||||||  |||| ||  | |||   |  | |    |  |||        | | ||  |    |  | || ||     |  | | |||||||||| || || ||||||||||| ||||||||||  || ||||| ||||||| |||||| ||| ||||||  ||||| | |    ||||||| ||||| || 
gtctgtgatatgaaattggtgagcagctctttcttgctcttctactcacttcagtcattttagatgattt--------agtattgagagaataacattttt-----ccctctcgtagCAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTT---CAGGGGCTGGTGGCCGT

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G11060.1 (Glycine max), 3'ss of exon 2
gtctgtgatgtgagattggtgagcagctctttctttttcttttatactcttttcttgtgtagtgtattttcaaaaaccattgttatgcatttggctttcttatatgctatgtggtagcagTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGG
||||||||| ||| |||||||||||||||||||||  |||| ||  | |||   |  | |    |  |||        | | ||  |    |  | || ||     |  | | |||||||||| || || ||||||||||| ||||||||||  || ||||| ||||||| |||||| ||| ||||||  ||||| | |    ||||||| ||||| || 
gtctgtgatatgaaattggtgagcagctctttcttgctcttctactcacttcagtcattttagatgattt--------agtattgagagaataacattttt-----ccctctcgtagCAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTT---CAGGGGCTGGTGGCCGT

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G03260.1 (Glycine max), 3'ss of exon 2
gtctgtgatgtgagattggtgagcagctctttctttttcttttatactcttttcttgtgtagtgtattttcaaaaaccattgttatgcatttggctttcttatatgctatgtggtagcagTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGG
||||||||| ||| |||||||||||||||||||||  |||| ||  | |||   |  | |    |  |||        | |||   |    |  | || || |    | | |  ||||||||| || || ||||||||||| ||||||||||  || ||||| ||||||| |||||| ||| ||||||  ||||| | |    ||||||| ||||| || 
gtctgtgatatgaaattggtgagcagctctttcttgctcttctactcacttcagtcattttagatgattt--------agtgtagagagaataacattttttt---ttctctcatagCAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTT---CAGGGGCTGGTGGCCGT

upper sequence: Vv01s0010g01410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G03260.1 (Glycine max), 3'ss of exon 2
gtctgtgatgtgagattggtgagcagctctttctttttcttttatactcttttcttgtgtagtgtattttcaaaaaccattgttatgcatttggctttcttatatgctatgtggtagcagTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGG
||||||||| ||| |||||||||||||||||||||  |||| ||  | |||   |  | |    |  |||        | |||   |    |  | || || |    | | |  ||||||||| || || ||||||||||| ||||||||||  || ||||| ||||||| |||||| ||| ||||||  ||||| | |    ||||||| ||||| || 
gtctgtgatatgaaattggtgagcagctctttcttgctcttctactcacttcagtcattttagatgattt--------agtgtagagagaataacattttttt---ttctctcatagCAGTTGCTCCAATGTGAACTTTGCTTTTCGTGGTGCTTGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTTCTGGAATTT---CAGGGGCTGGTGGCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcaaaaaccattgttatgcatttggctttcttatatgctatgtggtagcagTTGTTCGAACGTGAACTTTGCATTTCGTGGTGTGTGCAATCGTTGTGGAAGTGCTCGACCTTCTGGTGTGTCTGGCAGTGGTGCAGGGGCAGGTGGTCGG
                              tttcttatat  TA-rich tract