Sequence
atgc intronic sequence ATGC exonic sequence...gttttctttttgcggatttctcgggaaccaaacggagtgtctgaattggtgttttgtgtacgttgatgaactttttttggttgttgtttggtttccgaagTAGCGTGGTTGCTGCTAGAGGAAATTTGGAGTCGACGGGTGTGCCGACGTCGGTGCCGGTGCGCGTGGCGCTCGAGCTTCTTCAAGCTGGACATCG
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtgttttgtgtacgttgatgaactttttttggttgttgtttggtttccgaagTAGCGTGGTTGCTGCTAGAGGAAATTTGGAGTCGACGGGTGTGCCGACGTCGGTGCCGGTGCGCGTGGCGCTCGAGCTTCTTCAAGCTGGACATCG
cgttgat putative branch site (score: 5)
tttcc putative PPT
aacttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttttctttttgcggatttctcgggaaccaaacggagtgtctgaattggtgttttgtgtacgttgatgaactttttttggttgttgtttggtttccgaagTAGCGTGGTTGCTGCTAGAGGAAATTTGGAGTCGACGGGTGTGCCGACGTCGGTGCCGGTGCGCGTGGCGCTCGAGCTTCTTCAAGCTGGACATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - gaaccaa
- - - - - - - - - - - - - - - - - - -tgtctga
- - - - - - - - - - - - - - - - - - - - - - - tggtgtt