Sequence
atgc intronic sequence ATGC exonic sequencegtatgtcatgcatatcgtctggaaattgccttcttattttgtttataattagatgtttgcaattcatggttcaccatttctgctatcattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2044g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G36840.1 (Glycine max), 3'ss of exon 4
gtatgtcatgcatatcgtctggaaattgccttcttattttgtttataattagatgtttgcaattcatggttcaccatttctgctatcattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG
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------------------gtgagtctatataatctgttgtatttatgattgtgcttctgaaat--gtgtttgaatccttcctccttaaa-----actccagATCTTAACAACATTAAAGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTG
upper sequence: Vv00s2044g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G23820.3 (Glycine max), 3'ss of exon 4
gtatgtcatgcatatcgtctggaaattgccttcttattttgtttataattagatgtttgcaattcatggttcaccatttctgctatcattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG
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--------------------gtaagtctataatctgttgtttttctgattgtgcttttcaaat--gtgtttgaa----tccattctctttaaa-aatccagATCTTAACAACATTAAGGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCGCCACATGATACCGTGGAATTAGCCAGACGAATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattagatgtttgcaattcatggttcaccatttctgctatcattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG
gcttaat putative branch site (score: 4)
aattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtcatgcatatcgtctggaaattgccttcttattttgtttataattagatgtttgcaattcatggttcaccatttctgctatcattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA