Sequence
atgc intronic sequence ATGC exonic sequence...tcgttttcaaggaaaatacgttgcattttcctcgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s2006g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G39330.1 (Glycine max), 3'ss of exon 6
---tcgttttcaaggaaaata--cgttgcatttt--cctcgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
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atctctctttttgtgaacatgatcactgaaatagaacactgaatttgtcttagtt-ttacttagccttt---tgatgag-tgacaataagctgtttctgtttta--gTTAGCAGCACTGGACTTCATAGGCTGCACTGCTTCGGATGCATTCGCCATGACTGATTCAGGAAGTCAGCTATCATCTTTGGTGTCTGGATATCGAATAT
upper sequence: Vv00s2006g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G01390.1 (Glycine max), 3'ss of exon 7
-tcgttttcaaggaaaata--cgttgcatttt--cctcgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
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ttctctttttgtgaacatgatcactgaaatagaacactgaatttgttttggtt-ctactc--ttagtcttttgataaatgacaataagctgtttctgt--tgtagTTAGCAGCACTGGACTTCATAGGCTGCACTGCTTCAGATGCATTCGCCATGACTGATTCAGGAAGTCAGCTATCATCTTTGGTGTCTGGGTATCGAATTT
upper sequence: Vv00s2006g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G11990.1 (Arabidopsis thaliana), 3'ss of exon 10
tcgttttcaaggaaaatacgttgcattttcctcgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
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----------gtaaaacttaa-acatagacaaaccatcaaatccta--agtaaaaaccaattttgtattaatct--ttttttcctttggtttatgtgtagCTAGCGGCATTAGATTTCATCGCTTGTGCTGCAGCAGACGCTTTTGCGATGACGGATTCAGGGAGTCAGTTATCATCTCTTGTATCGGGTTATCGGATTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690821|gb|EC959957.1|EC959957EST: ACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATTTCAG CTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATT
genomic: ACTTGCTTTCATCATCTGAGATTGAACCCTTTAAGAATTTCTCATCTCAGgtaataactc ... tttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
aactgat putative branch site (score: 3)
ctgattttttattttt CT-rich tract
attttttattttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcgttttcaaggaaaatacgttgcattttcctcgtgtttgttctcattgctggtgagttgatgtatgatgaactgattttttattttttctttcctatagCTAGCAGCCTTAGACTTTATTGGCTGCACTGCTGCTGATGCATTTGCCATTACAGACTCTGGGAGTCAGTTATCATCTTTGGTATCTGGTTATCGGATAT
- - - - - ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - ttgctgg