1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attttgtattggaagtgccatagggcacatgaaagaatccttgtactattgaacaacatacctgagtgttattattatttttttcttaatcttgatgcagTTTTACACATTTCTTGAGACAACTCTTGTCACTTTATCGCTATTGCCTCATTTCATAGCATTCTTTTCTGATGGAGAGATACCTGGAACACCAGGCACCA
species | Vitis vinifera |
transcript | Vv00s1737g00010.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ctattgaacaacatacctgagtgttattattatttttttcttaatcttgatgcagTTTTACACATTTCTTGAGACAACTCTTGTCACTTTATCGCTATTGCCTCATTTCATAGCATTCTTTTCTGATGGAGAGATACCTGGAACACCAGGCACCA
tttttttcttaatctt CT-rich tract
tgttattattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttgtattggaagtgccatagggcacatgaaagaatccttgtactattgaacaacatacctgagtgttattattatttttttcttaatcttgatgcagTTTTACACATTTCTTGAGACAACTCTTGTCACTTTATCGCTATTGCCTCATTTCATAGCATTCTTTTCTGATGGAGAGATACCTGGAACACCAGGCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - -ccatagg
- - - - - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - - ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - - gaacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtgt