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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taacagcattcactgtttcaagtgtttgggttcctgggaacttgttcatcagtgtgtatagggaacaaactagtttattgctttctgtattgctttgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG

Basic information

species Vitis vinifera
transcript Vv00s1291g00010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G02760.1 (Glycine max), 3'ss of exon 3
-taacagcattcactgtttcaagtgtttgggttcctgggaacttgttcatcagtgtgtatagggaacaaactagtttattgctttctg-tattgctttgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG
   | ||      |    |||    |||||  || |   | |   |  ||     |||           | |  ||| |||   |  | |  | || | ||| ||| | ||||| || ||||||||||||||||| ||||| || ||  ||||||||||||| || ||||| || ||||||||||
gagagaggggggtcaaggtcagaaatttggcctcttctca-cacatctattt-catgttagatttttttattttttttttgtgatgggattcttctcttcagGCACCGATGGACAGGAAGATATGAAGCGCATCTATGGGACAATAGTTGCAGAAGGGAGGGTCAAGCCAGAAAAGGGCGTCAAG

upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G38190.1 (Glycine max), 3'ss of exon 2
taacagcattcactgtttcaagtgtttgggttcctgggaacttgttcatcagtgtgtatagggaacaaactagtttatt-gctttctgtattgct--ttgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG
   |  |||  | | |  | |||  |||  ||         || ||  | | | | | |     |   | |  ||| ||   |||  || ||| |    |||| ||| | |||||||| ||||||||||||||||| |||||||||||| | ||  | ||||                        
-gtcgtcatgaattttggccagt--ttgaattgaaaactctttttttcttaatatttgttatttatttatttttttgtttattttgggttttgttcaccgcagGCACCGATGGACGGGAAGATATGAAGCGCATCTATGGGATAACAGCTGTAGGCGAGAGG------------------------

upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G33240.1 (Glycine max), 3'ss of exon 3
taacagcattcactgtttcaagtgtttgggttc-ctgggaacttgttcatcagtgtgtatagggaacaaactagtttattgctttctgtattgctttgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG
   ||   |      |||    | ||      |        | ||||      ||||| |    ||   | |  ||| ||| |    |   | || ||||| ||| | ||||| || ||||||||||||||||| ||||| || ||  ||||||||||||| || || || || ||||||||||
-gtcaaggtcagaaatttggcctcttctcacacatctatttcatgttagattttgtgtctttttaatttatttattttttggtgatgggggttctctgcagGCACCGATGGACAGGAAGATATGAAGCGCATCTATGGGACAATAGTTGCAGAAGGGAGGGTCAAGCTAGAAAAGGGCGTCAAG

upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G10510.3 (Arabidopsis thaliana), 3'ss of exon 2
-----------------------------------------------------------------------taac-agcattcactgtttcaagtgtttgggttcctgggaacttgttcatcagtgtgtatagggaacaaactagtttattgctttctgtattgctttgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG
                                                                       | || |    |||  |  |  | |  |     |  ||     ||| |  |   | |||     |   ||       | |   | | || |||| |  | ||||| || |||||||| ||||||||||| ||||| |||||||| ||| | || || || || |||||||||||||| |||||||
gtaagtatataattaagaatccaataagttgtgattaggaattaattaagtactgttttgtgatttgccattgactaaaggtcaaagacttcaatactattactattgaagttttggtttttgttttgttctaagtgtaagtattaatgtaaatatttg-attgat--gtagACATAGATGGACGGGAAGATATGAAGCACATCTATGGGATAATAGCTGTAGGAGAGAAGGTCAGGCCAGGAAGGGACGTCAAG

upper sequence: Vv00s1291g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G65510.1 (Arabidopsis thaliana), 3'ss of exon 2
taacagcattcactgtttcaagtgtttgggttcctggga-acttgttcatcagtgtgtatagggaacaaactagttta-ttgc-tttctgtattgctt--tgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG
   ||   ||   | |||    |||  ||||       | | |||    |   | |    |      | |  |||| | ||   | | ||| ||| ||  |||||||| || ||||| || ||||| ||||||||||| |||||||||||| | || ||||| || || ||||| || || |||||||
---caaacttttgttttttggctgt--gggtgggaaaaagatttgacatttgatttaagcaattttgatatgagttcaattatatgtatgtgttgattgatgcagACATAGATGGACTGGAAGATACGAAGCGCATCTATGGGATAACAGCTGTAGGAGGGAAGGTCAAGCCAGAAAAGGACGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcagtgtgtatagggaacaaactagtttattgctttctgtattgctttgcagACACAGGTGGACGGGTAGATATGAAGCGCATCTGTGGGATAACAGCAGCAGAAGGGAGGGCCAGGCCAGGAAGGGGCGTCAAG
                                            ttgcttt  CT-rich tract
                         tagtttatt  TA-rich tract