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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtctcatgaaagttttggatgtgtgactatttctttattgttgttgttgttgttataaatcattgttgatgttgttattttgcaattcccttacattaatttaccagacttatgtttctgcagATATTTGCACGAACAAAGTACTTCTCATCAGTACTTTGGACTTTCAACTTATTTTTTCTTATGTATAATCGTATTCATGAAGGATATTCATTCTCCACTT

Basic information

species Vitis vinifera
transcript Vv00s1281g00010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s1281g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgggtctcatgaaagttttggatgtgtgactatttctttattgttgttgttgttgttataaatcattgttgatgttgttattttgcaatt------cccttacattaatttaccagacttatgtttctgcagATATTTGCACGAACAAAGTACTTCTCATCAGTACTTTGGACTTTCAACTTATTTTTTCTTATGTATAATCGTATTCATGAAGGATATTCATTCTCCACTT
||  || || |  | ||||      ||| | || |  |  || ||    ||   |   || ||   | |   || |  |   ||   |  |         | | |  |||| || ||| |||  |   ||||| | |||||||| || |  |||||  | |   | || |||||||||||| ||||||||||  | |  ||||| ||| ||||||||||||| ||||||| ||
gtatgtttccttta-gtttacctcttgtcagtaatcttggatcgtaagagtatatagaatgaaggttagggcatatcttagcttcttagctgatcattattcataaaaattcactagatttacatcaatgcagGTTTTTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttgttattttgcaattcccttacattaatttaccagacttatgtttctgcagATATTTGCACGAACAAAGTACTTCTCATCAGTACTTTGGACTTTCAACTTATTTTTTCTTATGTATAATCGTATTCATGAAGGATATTCATTCTCCACTT
                         cattaat  putative branch site (score: 3)
                                            tgtttct  putative PPT
                      ttacattaattta  TA-rich tract