Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattagattatacttatttctttgctgtatttagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA

Basic information

species Vitis vinifera
transcript Vv00s1194g00010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G06200.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------------------------aattagattatacttatttctt----tgctgtatttagctataaatatcttcaattcagtacaaactt-----atggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
                                                                                             |||   | |   |   |   |    || | |||||| | | || ||| | |  |  |  |   ||||     ||  |  || ||  || || | ||   || ||||||||||||||| |||||||||| ||  | |||||||||||||||||||||| |||||| |||| |
gttattcatctcaatagttaatggagtatatacaactgtttatttattaactgtgtaaaatacactaacttccatgttgtatttttaattaagattgtctcaccttagctatatgaagtgttttatttacccaaaattatttcctttctataattcactttatacatcctcattaccaatttctacctttt-tttttccagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATA

upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G39070.1 (Glycine max), 3'ss of exon 5
aattagattatacttatttctttgctgtatttagctataaatatcttcaatt---cagtacaaacttatggttttttcctctt-ccttctttccat-tcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
      ||| | ||| ||    || | |||||| | | ||  || |||  ||    ||| ||   |  |  | | | |   || ||   ||||    | || |||||||||||| |||||||||| ||  | ||||||||||| |||||||||| |||||| |||| |
-----aattttcctttttataatgttttatttatccaaaatcattttcctttttctagttcactttctttatatatcctgattacccaatttctgcctttttcagGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATCGTGCAGTATTATGGTAGCGAAATA

upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G10050.1 (Glycine max), 3'ss of exon 2
aattagattatacttatttctttgctgtatt-tagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
 ||  |  | ||  |||||  |   |      ||  | | || || |   |||   || |  ||| |   |  ||| | ||  ||  |||  ||  |||||||||||||| |||||||| | ||||| ||| ||||||| || ||||||| ||| ||||||| |
tatatgtatgtatatattttatccttccccaataattttgaagatatgttatttcttatat-cttctttatccttcttattaatttattctttttctccagGAAATTAAAGTTCTTAGCAATCTAAAACATTCAAACATCGTACAGTATTATGGCAGTGAAATA

upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G20460.1 (Glycine max), 3'ss of exon 4
-aattagattatacttatttctttgctgtatt-tagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
    | |  ||||  ||||| |  | |  ||  ||| | | || || | | |||   || |  ||  |  |  || | | ||  ||  |||  ||  |||||||||||||| |||||||| | ||||| ||| ||||||| || ||||||| ||| ||||||| |
ctgcttggctatatatatttatc-gttccataatagttttgaagatatgctattttctatatcctctttatcctt-cttattagtttattctttttctccagGAAATTAAAGTTCTTAGCAATCTAAAACATTCAAACATCGTACAGTATTATGGCAGTGAAATA

upper sequence: Vv00s0567g00010.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G66850.1 (Arabidopsis thaliana), 3'ss of exon 3
-----aattagattatacttatttctttgctgtatttagctataaatatcttcaattcagtacaaacttatggttttttcctcttccttctttccattc-ttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
         ||   | ||  |||       ||   | ||  |    | | ||   ||  || |    || |  | | |       | |||| |  |||  || ||||| || ||| |||| ||  | ||  | ||||||||||||||||||||||||||||| || |||
gtaacctccaggagagaca-attctcccagtgctctcagtcacggctgtgtttggtt--gttcg--tttgttatatatcttatagctttctatttatttatttcagGAGATCAAACTTCTAAGTAACCTTCAACATCCAAACATTGTGCAGTATTTTGGTAGCGAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaattcagtacaaacttatggttttttcctcttccttctttccattcttccagGAAATTAAAATTCTTAGCCAACTAAAGCATCCAAACATTGTGCAGTATTTTGGTAGTGAAACA
                cttatggttttttcct  CT-rich tract
             aaacttat  TA-rich tract