Sequence
atgc intronic sequence ATGC exonic sequencegtaaggactttttgattctcacttttttgcttctctaaacttcacttattgaattctttactatttctagGTCATTACAAATGGGCACTGGATGAGTTGTTCTACAAGAATAATTTCAGCCGAGTAATCATACTTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G00200.1 (Glycine max), 3'ss of exon 9
-----------------------------------gtaaggactttttgattctcacttttttgcttctctaaacttcacttattgaattctttactatttctagGTCATTACAAATGGGCACTGGATGAGTTGTTCTACAAGAATAATTTCAGCCGAGTAATCATACTTGAAG
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tgaattaaattactaggggaccaaatccgaaactggagataaactgagggaccaaatttgcaattttgcctaaagaatattcaattgattcc-----gttatcagGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTAATCATCCTTGAAG
upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G00230.1 (Glycine max), 3'ss of exon 9
gtaaggacttt----ttgattctcacttttttgcttctctaaacttcacttattgaattctttactatttctagGTCATTACAAATGGGCACTGGATGAGTTGTTCTACAAGAATAATTTCAGCCGAGTAATCATACTTGAAG
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gtaagagttttcttcttgatttccatgtgttctctatttaaaaa---gaatattcaattgatt-ccattatcagGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTGATCATTCTTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcacttttttgcttctctaaacttcacttattgaattctttactatttctagGTCATTACAAATGGGCACTGGATGAGTTGTTCTACAAGAATAATTTCAGCCGAGTAATCATACTTGAAG
ctctaaa putative branch site (score: 3)
ttctttactatttct putative PPT
ttattgaattctttac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggactttttgattctcacttttttgcttctctaaacttcacttattgaattctttactatttctagGTCATTACAAATGGGCACTGGATGAGTTGTTCTACAAGAATAATTTCAGCCGAGTAATCATACTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG