Sequence
atgc intronic sequence ATGC exonic sequencegtacgttgcatacgtttatttttgtttatttgtttattttttatgtgcatgaagtgtagcttgtttgagtagaggagatccactgcagatttgtgtggtatcttattgatcagcttccttcattgcaattatcaaaaaacaaggaaactcatttttaagaattacctatttattggatctttaacagGTGGAGGCAGAAAACCTTTGTACCAGTCAAATGCGATCTCTGATTGATCAAATAAGTATGCAACAAGGACGAATTGTGGCCCTTGAAGGTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0921g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G00230.1 (Glycine max), 3'ss of exon 2
gtacgttgcatacgtttatttttgtttatttgtttattttttatgtgcatgaagtgtagcttgtttgagtagaggagatccactgcagatttgtgtggtatcttattgatcagcttccttcattgcaattatcaaaaaacaaggaaactcatttttaagaattacctatttattggatctttaacagGTGGAGGCAGAAAACCTTTGTACCAGTCAAATGCGATCTCTGATTGATCAAATAAGTATGCAACAAGGACGAATTGTGGCCCTTGAAGGTTAG
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-------------------------------------------------------------------------gtaactcaactcc---tctgc------tcatattaatttatattctatatttccatagctagtatttggtggg--tcatcaatatcgttg--ctaattcttg----tttcacagATCGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCGCTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTGGAAG-----
upper sequence: Vv00s0921g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G00200.1 (Glycine max), 3'ss of exon 2
gtacgttgcatacgtttatttttgtttatttgtttattttttatgtgcatgaagtgtagcttgtttgagtagaggagatccactgcagatttgtgtggtatcttattgatcagcttccttcattgcaattatcaaaaaacaaggaaactcatttttaagaattacctatttattggatctttaacagGTGGAGGCAGAAAACCTTTGTACCAGTCAAATGCGATCTCTGATTGATCAAATAAGTATGCAACAAGGACGAATTGTGGCCCTTGAAGGTTAG
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--------------------------------------------------------------------gtaacttaactcctctgcttcttaat----tctcatattaatttatattctatatttccatagctagtatttggtggg--tcatcaatatcg-ttgctaatcctttg----tttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAG----- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaaaacaaggaaactcatttttaagaattacctatttattggatctttaacagGTGGAGGCAGAAAACCTTTGTACCAGTCAAATGCGATCTCTGATTGATCAAATAAGTATGCAACAAGGACGAATTGTGGCCCTTGAAGGTTAG
tcttt CT-rich tract
atttttaagaattacc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgttgcatacgtttatttttgtttatttgtttattttttatgtgcatgaagtgtagcttgtttgagtagaggagatccactgcagatttgtgtggtatcttattgatcagcttccttcattgcaattatcaaaaaacaaggaaactcatttttaagaattacctatttattggatctttaacagGTGGAGGCAGAAAACCTTTGTACCAGTCAAATGCGATCTCTGATTGATCAAATAAGTATGCAACAAGGACGAATTGTGGCCCTTGAAGGTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG