1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtataattcatgatttacttttaactttttagcataatagagaagggtcaatgccatagatgggctttaatagaggaaaataagagaaacccaacacgaaaacatatcaatgtgatatttaatttggaaaatttgtacattatcttgaactttgattttgagaataatggtggaatgtgatttgctttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGCTGGAAGAACAGGTTGTGAATTTCCGACAAGGTCTTTATCAGGAAGCTG
species | Vitis vinifera |
transcript | Vv00s0804g00020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|349825760|gb|FQ421859.1|FQ421859
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|351043204|gb|FQ443925.1|FQ443925
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|351017118|gb|FQ424545.1|FQ424545
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|349830298|gb|FQ420558.1|FQ420558
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|351033551|gb|FQ447710.1|FQ447710
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|351019923|gb|FQ439740.1|FQ439740
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|351023735|gb|FQ448286.1|FQ448286
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGEST: gi|349826384|gb|FQ417881.1|FQ417881
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
EST: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATAT ACATTAGAGCTTCTTGCTGAAGTTGCCGCATTGGAAGAGGAGGTTGTTCGG
genomic: CTAGACCTTTAGGAGCTCTTCCTCGTCTTCCTCCTTATCTGCCTCCATATgttagtataa ... tttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGG
tatcttgaactttgattttgagaataatggtggaatgtgatttgctttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGCTGGAAGAACAGGTTGTGAATTTCCGACAAGGTCTTTATCAGGAAGCTG
ctttgat putative branch site (score: 5)
tttgcttt putative PPT
attttgagaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtataattcatgatttacttttaactttttagcataatagagaagggtcaatgccatagatgggctttaatagaggaaaataagagaaacccaacacgaaaacatatcaatgtgatatttaatttggaaaatttgtacattatcttgaactttgattttgagaataatggtggaatgtgatttgctttgttatagACATTAGAGCTTCTTGCTGAAGTTGCCGTATTGGAAGAGGAGGTTGTTCGGCTGGAAGAACAGGTTGTGAATTTCCGACAAGGTCTTTATCAGGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG