Sequence
atgc intronic sequence ATGC exonic sequencegtgagtactgtagctcctttaacattccctaaccccttcctttttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0669g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G22210.2 (Glycine max), 3'ss of exon 6
--------gtgagtactgtagctcctttaacattccctaaccccttcct---ttttaaattaaatgctaccttattttcttctagagaaactgaataa--agattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACC
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gtgtgtacatggcttgttttgttaattctatattcatcaaatcttttttcagtggtgccctggaaattaccatcttattaattacacaaattgtcttgttgagtctacagGTGCCAGATTATTTGTGCTGTAGAATTACACTCGACATTTTCCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGAGCAGTGATTCTTGAGC
upper sequence: Vv00s0669g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G07370.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagtactgtagctcctttaacattccctaaccccttcctttttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACC
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--gtgcattaaattttctttaaaagcttttaagacccatcgttc--atttatatttgaggtcaaatacatttctggtttttc--------ttttcagGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACC
ttttc CT-rich tract
tgaataaagatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtactgtagctcctttaacattccctaaccccttcctttttaaattaaatgctaccttattttcttctagagaaactgaataaagattttcagGTTCCGGACTACCTATGCTGTAAAATTACACTTGATATTTTCCGCGACCCTGTCATTGCTCCAAGTGGGCTTACATATGAGAGAGAAGTGCTTCTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT