Sequence
atgc intronic sequence ATGC exonic sequence...ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtcagctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S79_75V6.1 (Physcomitrella patens), 3'ss of exon 12
ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtc--agctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
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-ggaagtatatggatttagaggtttgaggtttctgcatatccacatggtttcttc-tgattttggttgagctttgatttgagacaaattgtttatatcacagGATCCAGCTGTTACAGACGTTGCTATAGCTGCACTTAATGGATTGAAAATGGGTGACAAGACTTTAAGCGTGCGTCGTGCTTCTGCTAG
upper sequence: Vv00s0611g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S58_254V6.1 (Physcomitrella patens), 3'ss of exon 13
ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtcagctaat--ttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
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gagagtagagcgatgataatctttgaagtttcttcaaagccgaagctat--gatgctgatcttggttaacctgtgagctgtgaaaaatcatttatctcgcagGATCCAGCTGTTACAGATGTTGCTATTGCTGCACTTAATGGGTTGAAAATGGGTGACAAGACTTTAAGCGTGCGTCGTGCTTCTGCCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37189838|gb|CF609187.1|CF609187EST: GAAACTCTAAGGGATATGGTTTCTGTGTTTATCAG GATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATG
genomic: GAAACTCTAAGGGATATGGTTTCTGTGTTTATCAGgtgaacaaag ... tgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctggaaggtcatcctttatgacatctggtcagctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
agctaat putative branch site (score: 3)
taatttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgctcttctcaattgcagtcttttaagatatataacctttcatttttctggaaggtcatcctttatgacatctggtcagctaatttatatgcacttcagGATCCAGCTGTGACTGACATTGCTTGTGCTGCGCTTAATGGCTTGAAAATGGGTGATAAGACTCTTACAGTGCGTCGTGCCACAGTTGG
- - -cttctca
- - - - - - - tgcagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatcct