Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

Basic information

species Vitis vinifera
transcript Vv00s0551g00020.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
--tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
   | ||      || | || | | | | ||| ||    | |  | |  | |      |      |         || ||  | |        || |||||||| |||||| |||| |||||||| || || ||||||||  |||||||||| ||||||||||| ||||| ||||| |||||||   |||| ||| ||||||
agccaaaatgtattcac-atgctgctgt-ctgattcacttttgaatgttttggccctataatccaaatattgtgcataactattttttgaccttgctttcagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os03g40180.1 (Oryza sativa), 3'ss of exon 2
------tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggt-tgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
      ||  ||   | |  | ||  |  |   |   ||  ||| | |   |||| |||     |  | |   ||   |  || |  |         || |  ||||||||||||| |||| ||||| ||||| || ||||||||  |||||||||| ||||||||||| ||||| || || |||||||   |||| ||| | ||||
gggtgctcccatttatttaccaatttatataatcacatttgaatattttgtcctgtaatcaaaatattgtgcttaactatttgtcgttac-------ctttcctcagGGTTATGTGGTTTACCGTGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTACGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G034794_T02 (Zea mays), 3'ss of exon 2
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtac-tgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC-----------------------------
                         |  | ||||| |     | || | ||| | ||| |  |||      ||||    |||||  | ||  | | |||||||||||||  |||| ||||| |||||||| ||||||||  |||||||||||||||| || || ||||| ||||| ||||| |   |||| ||| | ||||                             
-----------------------gattgtacttgtcagtgtaatgctttgaactagtt-cactatt-----aaattgt-ctctgactctatatttgttcagggttatgttgtttaccgtgtccgtgttagGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCCAGCTCAAGTTCCAGAGGAACAAGAGGTCT

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G034794_T01 (Zea mays), 3'ss of exon 2
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtac-tgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
  || |  |  | | ||      |   | | ||||| | | | ||  |     |     |||  ||   |  ||     |||||  | ||  | | |||||||||||||  |||| ||||| |||||||| ||||||||  |||||||||||||||| || || ||||| ||||| ||||| |   |||| ||| | ||||
gatagtttcagttttgagtagaatgaacagattgtact-tgtcagtgtaatgctttgaactagttcactattaaattgtctctgactctatatttgttcagGGTTATGTTGTTTACCGTGTCCGTGTTAGGCGTGGTGGCAGGAAGAGGCCTGTGCCTAAAGGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 2
tctaat-cactctctcgatccagtt-ctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctg-gatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
  || |   || | | |      || || |  |||  ||| |  |      | ||   |  |   || |   |  | |      || | |      | ||||||| |||||  | || ||||| ||||| |  ||||||||  |||||||||||||||||||||| ||||| ||||| |||||||   |||| ||| | ||||
--tagtatgctatgttgccttgtttgcttcatcttacaat-tgcagtttgagtatatatgtcctgattttgtctgacgttgtgttgtggtaattcatcttcagGGATATGTTGTCTACCGTGTCCGTGTGAAGCGTGGTGGCAGGAAGAGGCCTGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 1
----tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
     ||  |   | |||  |     ||    | ||| |  | |  ||    |    | | ||||   |   |     ||| ||  ||  |    | | ||||||| |||||  |||| || || ||||| || ||||||||  |||||||||||||||| ||||| ||||| ||||| |||||||   |||| ||| | ||||
aacagcttgtacttgtctgtaatgcattgaattactt-tgctttgaaaattcgag--tagctgctgggtgcccgggtctga-accttgtgttatttttgttcagGGGTATGTTGTTTACCGCGTCCGTGTGAGGCGTGGTGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G466136_T01 (Zea mays), 3'ss of exon 1
tctaat-cactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctat-atctacacaaatgacactctg-gatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
   | |   || | |    |  |||    |  || || | |   ||  ||        ||  || || |      |||  |   || | |    | | |||||||||||||  | || | ||| ||||| |||||||||||  ||||||||||| |||||||| | ||||| ||||| ||||| |   |||| ||| | ||||
---agtatgctatgttaggcttgtttactttattttattattgcagtttgagtacctatgtcatgattttatttgatgttatgttgtggtaatttatcttcagGGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGCAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCAAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AC212184.3_FGT010 (Zea mays), 3'ss of exon 1
tctaat-cactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacac---aaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
   | |   || | |    |  |||    |  || || | |   ||  ||        ||  ||   |  |    |  | |   |||||   | |  | ||||| |||||||  | || | ||| ||||| |||||||||||| ||||||||||| |||||||| | ||||| ||||| || || |   |||| ||| | ||||
---agtatgctatgttaggcttgtttactttattttattattgcagtttgagtacctatgtcatgattttatttgatgttatgttctggtaattc-atcttcagAGTTATGTTGTGTACCTTGTCCGTGTGAGACGTGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAATCCAAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G302876_T01 (Zea mays), 3'ss of exon 4
tctaatcactctctcgatccagttctgctgcttgtaatct---ataagcctggaattggttgctat-atctacacaaatgacactctg-gatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
   | |     ||| ||    || |  ||  || |  ||    | |||  ||        ||  || || |      |||      || | |      | || |||||||||| || || | ||| ||||| || | ||||||| ||||||||||| |||||||| | ||||| ||||| |||||||   |||| ||| | ||||
---attaggagtcttgag--ggtacccctaattatggtccccgacaagtttgagtacctatgtcatgattttatttgatgttgtgttgtggtaattcatctttagGGTTATGTTATGTACCTTGTCCGTGTGAGGCATGGTGGTAGGAAGAGGCCTTTGCCCAAGTGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 2
tctaatcactct--ctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
   ||  ||||   || |    |||  |  ||| |  ||    |   |   |||    ||    ||  | |         ||  ||  |    | | ||||||| |||||  |||| ||||| ||||| |  ||||| ||  |||||||||||||||| ||||| ||||| ||||| |||||||   |||| ||| | ||||
atgaacaactcgtacttgtctgagtaataatgcattgaactagttcactctgaa--aatttgagtagttgctgggtctgaacgttgtgttatttttgttcagGGGTATGTTGTTTACCGTGTCCGTGTCAAGCGTGGCGGCAGGAAGAGGCCTGTGCCGAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATCACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 2
----tctaatcact-ctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
    | |   || | || || |    |     |    |  | | | |   ||| |  |   |||  || |  |     || |   |||   ||||   ||  ||||||||||||||||| |||||||||||  || | ||||| |||||||| || || || || || |||||||||||||||||||| |||||||||||||| |
tgcctttgtccattactatcaactgggccagtcctggtagagtatttgcaccttgcttcatttga-atcttgattttgattatgatct---tgtaacattc-cagGGTTATGTGATTTACCGTGTTCGTGTACGAAGGGGTGGCCGGAAGAGACCAGTTCCAAAAGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G41620.2 (Glycine max), 3'ss of exon 2
----tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
    |   || | | |  | |    ||    |    |  |     |   | |    ||| ||| |   ||   ||||     | | ||  | |     |  ||||| ||||||||||| ||||||||||||||  | ||||| || ||||| || || ||||| || ||||||||||| |||||||||||||| || |||||||
agtattgtattattgtgccaagtgtgtctgtccttgtaaagctgttgcacattcccttgtttgtt---tcagtacaatgttgattgtgattatgacaatg-cagGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 2
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatcta---cacaaatgacactctggatgtactgt-tttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
  | |  | | |   ||  ||   ||  ||   |||||  ||||    |       |||||  |  |    |   | |   | | |     ||     || |||||||| |||||||| |||||||| ||  || | ||||| || ||||| || || || ||||| |||||||||||||||||||| |||||||||||||| |
--tcagaattatgatgaaacaaacct--tgtcagtaatgaataattgagttgcaccttgcttcacttgaatcttgattatgattatattcttataacattccagGGTTACGTGATTTACCGTGTTCGCGTACGAAGGGGTGGCCGTAAGAGACCAGTTCCAAAGGGTATTGTTTATGGTAAGCCCACCAACCAAGGTGTTACTC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G16720.1 (Arabidopsis thaliana), 3'ss of exon 2
tctaatcactctctcgatccagttctgctgcttg-taatcta-taagcctggaattggttgctatatctac-acaaatgacactctggatgt-actgt-tttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
     | | |      ||   |    | || ||| | ||  | | |   |  |  | ||  | |  |||   ||||||   | |   |||||   ||| | |||||| | |||  | || ||||| ||||| ||||||||||| || |||||||| ||||| ||||| ||||| ||||||||||| |||||||| || || || |
----gttagtggagaaatatggaagcgttgtttgatgattgaatcatttttaatctagtctcaaattctgttacaaatc-tagttgagatgttgatgtatgtcagGGCTTTGTTGTGTACCGTGTACGTGTGAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATTGTGTATGGTAAGCCAACAAACCAGGGAGTGACAC

upper sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 2
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctgg--aattggttgcta--tatctacacaaatgaca-ctctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
  | ||   | | |   |  ||  |||   |    ||  | ||    ||    ||  |||  |   | |||       ||||  ||||  ||   |||| ||  ||||| |||  | || |||||||| || ||||||||||| || |||||||| ||||| ||||| || || || ||||| ||||| ||||| || || || |
--tgatacatttttt--ttaagccctggatcaaaaaaattgtacttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTT-TGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706230|gb|FC055428.1|FC055428
EST:     GCCTACTCGTCCTGACAAGGCTCGCAGACTTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGTTCGGAAGAGGCCT
genomic: GCCTACTCGTCCTGACAAGGCTCGCAGA-TTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110703558|gb|EE080507.1|EE080507
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77578659|gb|DV218115.1|DV218115
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|33407595|gb|CF213222.1|CF213222
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110700799|gb|EE077771.1|EE077771
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110381615|gb|EC934931.1|EC934931
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71876878|gb|DT025933.1|DT025933
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110399445|gb|EC965951.1|EC965951
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110412621|gb|EC978376.1|EC978376
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|34416789|gb|CF415543.1|CF415543
EST:     CAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: CAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71869219|gb|DT018274.1|DT018274
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110690149|gb|EE066996.1|EE066996
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77585448|gb|DV221812.1|DV221812
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77580789|gb|DV219302.1|DV219302
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110365611|gb|EC928892.1|EC928892
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110419172|gb|EC985379.1|EC985379
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|27583152|gb|CB005847.1|CB005847
EST:     GCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110420814|gb|EC987095.1|EC987095
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77581056|gb|DV219453.1|DV219453
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71870004|gb|DT019059.1|DT019059
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|351023872|gb|FQ423295.1|FQ423295
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|37188054|gb|CF607405.1|CF607405
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110686859|gb|EE063761.1|EE063761
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110402422|gb|EC960133.1|EC960133
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110724942|gb|EE101221.1|EE101221
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|33407506|gb|CF213133.1|CF213133
EST:     GGCCTACTGGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|351040720|gb|FQ438264.1|FQ438264
EST:     GGCCTACTCGTCCTGACAAGGCCCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|33401453|gb|CF207080.1|CF207080
EST:     GGCCTACTCGTCCTGACAAGGCTCACAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77580051|gb|DV218913.1|DV218913
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|27585092|gb|CB007787.1|CB007787
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71871277|gb|DT020332.1|DT020332
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|22008891|gb|BQ793925.1|BQ793925
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|161714660|gb|FC064468.1|FC064468
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|351029497|gb|FQ436891.1|FQ436891
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71875755|gb|DT024810.1|DT024810
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|46918295|gb|CN547624.1|CN547624
EST:     CTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: CTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110696465|gb|EE072606.1|EE072606
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77579565|gb|DV218629.1|DV218629
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|77585446|gb|DV221811.1|DV221811
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|71869210|gb|DT018265.1|DT018265
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110422522|gb|EC988847.1|EC988847
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
EST: gi|110402104|gb|EC968738.1|EC968738
EST:     GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAG                         GGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT
genomic: GGCCTACTCGTCCTGACAAGGCTCGCAGATTGGGCTACAAGGCTAAGCAGgtaacaagtg ... ctgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC
                                             ctgttttc  CT-rich tract
               tatatcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctggaattggttgctatatctacacaaatgacactctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

- - - - ctctctc
- - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - -agcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggatg