Sequence
atgc intronic sequence ATGC exonic sequence...gattttacttgatgactgccagttgtgaaatcagttacatgtgaaaatgacatccttggttagtattccatttaaaaacagatgtgttgccttttaacagGTTATAAATTTCGAAATGCCTCAAAATGCTCCAGGATATGTACATCGAATTGGACGTACTGGAAGAGCATATAATAGTGGTGCATCTGTATCTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0525g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G29360.1 (Glycine max), 3'ss of exon 9
gattt-tacttgatgactgccagttgtgaaatcagttacatgtgaaaatgacatccttggttagtattccatttaaaaacagatg-tgttgccttttaacagGTTATAAATTTCGAAATGCCTCAAAATGCTCCAGGATATGTACATCGAATTGGACGTACTGGAAGAGCATATAATAGTGGTGCATCTGTATCTCTT
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aattggtaattttcatcttctggtttatatccatgtttcatggggagagtgcctgttcaccaa--aaccagttagttaatgctttctcttgttgatgaacagGTTATAAACTTTGAAATGCCTCAGAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG
upper sequence: Vv00s0525g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G37930.1 (Glycine max), 3'ss of exon 3
-------------------------------------------------------------------------------------------gattttacttgatgactgccagttgtgaaat-cagttacatgtgaaaatgaca-tccttggttagt-attccatttaa--aaacagatgtgttgccttttaacagGTTATAAATTTCGAAATGCCTCAAAATGCTCCAGGATATGTACATCGAATTGGACGTACTGGAAGAGCATATAATAGTGGTGCATCTGTATCTCTT
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gtatgcaagtcctctcttatatctctgttatatttgtgtctaacattgacattttgctctgcatatgccatttttagtaagagttgcatactatgttaattggtaaattcatcttctggtttatatccatgtttcatggggagagtccctgttcagcgaaaccagttagttaatgctttctcttgttgatgaacagGTTATAAACTTTGAAATGCCTGAAAGTGTAGCGGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTG
upper sequence: Vv00s0525g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G34910.1 (Arabidopsis thaliana), 3'ss of exon 9
------------------------------gattttacttgatgactgccagttgtgaaatcagttacatgtgaaaatgacatccttggttagtattccatttaaaaacagatgtgttgcctttta-----acagGTTATAAATTTCGAAATGCCTCAAAATGCTCCAGGATATGTACATCGAATTGGACGTACTGGAAGAGCATATAATAGTGGTGCATCTGTATCTCTT
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gtatgctacttgacttttgctaagggggttttcttttctttgtttttgtactctttgctgcttgggatattgtaagaatccttcttttctttgctctatactcttaaccttcccttaaaccttttttatgcacagGTTATAAACTTTGATATGCCTCAAAGTGTTACTGGATATATCCATCGAATTGGGCGTACAGGGAGAGCATATAGCAGCGGATCTTCCGTTTCTCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatgacatccttggttagtattccatttaaaaacagatgtgttgccttttaacagGTTATAAATTTCGAAATGCCTCAAAATGCTCCAGGATATGTACATCGAATTGGACGTACTGGAAGAGCATATAATAGTGGTGCATCTGTATCTCTT
ttgcctttt CT-rich tract
tattccatttaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gattttacttgatgactgccagttgtgaaatcagttacatgtgaaaatgacatccttggttagtattccatttaaaaacagatgtgttgccttttaacagGTTATAAATTTCGAAATGCCTCAAAATGCTCCAGGATATGTACATCGAATTGGACGTACTGGAAGAGCATATAATAGTGGTGCATCTGTATCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - -cttgatg
- - - - - - - actgcca
- - - - - - - - - - - - - gaaatca
- - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - aaatgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - tccttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgttgc