Sequence
atgc intronic sequence ATGC exonic sequence...taaatggggcctcatgtgagtgttagtttattgtaattcagtggcatgacagtatttgcactattaatggtaaagattaaagtagcctttttgtctgtagGATGTCTCTGATGCTCAATGGAGAAACTTTCGGGGGAACTTGCCTACTCTTACTGTTGTTTTTGGAATTTTTGCATTTGTGGCCAATTTGTTGAGGGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0507g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G042981_T01 (Zea mays), 3'ss of exon 2
taaatggggcctcatgtgagtgttagtttattgtaattcagtggcatgacagtatttgcactattaatggtaaagattaaagtagcctttttgtctgt---agGATGTCTCTGATGCTCAATGGAGAAACTTTCGGGGGAACTTGCCTACTCTTACTGTTGTTTTTGGAATTTTTGCATTTGTGGCCAATTTGTTGAGGGCAT
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---------------gtgcgtgccatttcacca-gtttcagtcttgtgttt-tacctgaagaccgaggggcttcccgtttaatttccttctcatctgtcgcagGACCTGTCGGATGCGCAATGGAGAAACTTCCGCGGGAACTTGCCAATTCTGACTGTTGTAATGGGAGCATTTCTGATTCTGGTCAATACGTTGAGATATT
upper sequence: Vv00s0507g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 3'ss of exon 2
taaatggggcctcatgtgagtgttagtttattgtaattcagtggcatgacagtatttgcactattaatggtaaagattaaagtagcctttttgtctgtagGATGTCTCTGATGCTCAATGGAGAAACTTTCGGGGGAACTTGCCTACTCTTACTGTTGTTTTTGGAATTTTTGCATTTGTGGCCAATTTGTTGAGGGCAT
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---------------gtaa-tgtgtgattcttaaagttccattttttctacgtattctaattgctt----tgaagctcattatc-tgtgtttggttgtagGATGTTTCTGATGCTCAATGGAGGAACTTTCGTGGAAATTTGCCAATTCTTAGCTTTGTTTTCGCTGTTTTCACTGTGATTGCAAATGGGGTTAGGTCGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgacagtatttgcactattaatggtaaagattaaagtagcctttttgtctgtagGATGTCTCTGATGCTCAATGGAGAAACTTTCGGGGGAACTTGCCTACTCTTACTGTTGTTTTTGGAATTTTTGCATTTGTGGCCAATTTGTTGAGGGCAT
tattaat putative branch site (score: 2)
cctttttgtct putative PPT
taaagattaaagta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaatggggcctcatgtgagtgttagtttattgtaattcagtggcatgacagtatttgcactattaatggtaaagattaaagtagcctttttgtctgtagGATGTCTCTGATGCTCAATGGAGAAACTTTCGGGGGAACTTGCCTACTCTTACTGTTGTTTTTGGAATTTTTGCATTTGTGGCCAATTTGTTGAGGGCAT
- - - - -cctcatg
- - - - - - - - tgagtgt
- - - - - - - - - - - - - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaga