Sequence
atgc intronic sequence ATGC exonic sequencegtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatatattcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGGGAAGAAGTGATTGGCAGCCATTATCTTCAATTCCCGAGTTGACTACAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0499g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G36110.1 (Glycine max), 3'ss of exon 2
gtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatatattcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGGGAAGAAGTGATTGGCAGCCATTATCTTCAATTCCCGAGTTGACTACAGC
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------------------------------------------------------------------------------tgaattccgaggctgcac-tgttt-cagactttgg-----gcacatttgtttta-tggtgaaa--ttgaaacctctattgtcatatttacatgga---aattggtgtggatagAGCATTTCTTGAATGGATACCTCTCCGAAAATACGTTTGTGTGGTCTGAAGGAAGTAGTGAGTGGCAGCCCTTGTCCTCGGTTTCTGACCTGTGGGCTCA
upper sequence: Vv00s0499g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G31450.1 (Glycine max), 3'ss of exon 2
gtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatatattcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGGGAAGAAGTGATTGGCAGCCATTATCTTCAATTCCCGAGTTGACTACAGC
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--------------------------------------------------------------------------------------gaatactgaggcagcactgtttcagactttgagcacatttgtcttat--gttgaaattgaaacctctatttgtcatatttaaatgga---aattggcatggacagAGCATTTCTTGAATGGATACCTCTCCGAAAATACATTTGTGTGGTCTGAAGGAAGGA-------------------------------------------
upper sequence: Vv00s0499g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G36110.2 (Glycine max), 3'ss of exon 2
-------gtaagtgaatgtgtttatgtggacaattga-ggattctcttgatggcattggcatactgata--tatt-catttagtggtgttgtttttcggttccccccctattt--gtggattctg---------tttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttattt---acttggcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGGGAAGAAGTGATTGGCAGCCATTATCTTCAATTCCCGAGTTGACTACAGC
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gttatttgaaactgtctctctctctgttttttttttttgaatgaacaaagtggagtggagctagggctaggtattgtacattttgatttttgttgtttgttccccaattaattaagtgaattccgaggctgcactgtttcagACTTTGGGCACATTTGTTTTATGGTGAAATTGAAACCTCTATTGTCATATTTACATGGAAATTGGTGTGGATAGAGCATTTCTTGAATGGATACCTCTCC--------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964672|gb|GW838475.1|GW838475EST: TGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCG AGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGCCTGAGG
genomic: TGGTGAAAATCAACAGAATCTTGGCCCTTATGCGTTTTCAGAGTTGCGCGgtaagtgaat ... gcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGGGAAGAAGTGATTGGCAGCCATTATCTTCAATTCCCGAGTTGACTACAGC
tacttagatttattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtgaatgtgtttatgtggacaattgaggattctcttgatggcattggcatactgatatattcatttagtggtgttgtttttcggttccccccctatttgtggattctgtttcttgaatttcagttatactggtgaaaaattgcacgatgaattggtctacttagatttatttacttggcgtggacagAGCATTTCTTGAATGGGTACCTCTCTGAAAATTCCTTATTGTGGTCTGAGGGAAGAAGTGATTGGCAGCCATTATCTTCAATTCCCGAGTTGACTACAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT