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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC

Basic information

species Vitis vinifera
transcript Vv00s0475g00050.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os06g40730.1 (Oryza sativa), 3'ss of exon 8
---gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
       ||  || | || |         || |  |   | ||  || ||||   || |      ||||| |    ||| |  |  ||| | || | | ||||| || || ||  | || || |||||||| |||||||| ||  |  | || || |||||||||||||| ||||| || |||||||| ||||||||||| |
gtaagtctaactcttgcttgctttacaaaggctgaacagttaatggatgcatgctaaata---catttataactcattttct-tggtgtat-ttgtctacagGGGGACAAAAACTTAATCAAATTTGATGGCGATCACAATTCCCCCAGGCCTCAATTTTATTATGATTCTGTTTCAATATTCTTCTATAATGTTCTACACC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 8
----gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
     ||  |  | |   |||||   | || ||    | ||   ||     ||     | | | | ||  | |  |||    ||||   | | || ||||||||| ||||| ||||| || || |||||||||||||| || ||| |  |||| || |  ||||||||||||||||| || |||||||||||   | | ||||
tcctttaacaaataaca-tggagat-tggtagtcgattatttctgctgcatatcttgctagccattttcttaattattgcctcatagcctgt-ttgtgtgcagGGGGATAAAAATATAATTAAATTTGATGGTGATCATAATTCTCCAAGACCTCAATCATATTATGATTCAGTTTCTATATTCTTCTACAAATCTTTGCATC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 9
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaat-tggcgtctttatgaaaat-tttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
||||| | |||  |      |||  || |   |    ||   |  |  ||||  | |   | | | |  ||||| | || | |  | | ||  || || |||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||| || |  |
gtattctttcaaaccatcaacctaatgttcttaaagcaacatgcagttttgctctctcttgacataaacaaaatatctaacttgatctctaa-atctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G12950.1 (Glycine max), 3'ss of exon 7
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaat-tggcgtctttatgaaaat-tttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
||||| | |||  |       ||  || |   |    ||   |  |  ||||| | |   | | | |  ||||| | || | |  | | ||  || || |||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| | |||| ||||| ||||||| |||||||||||||| || || |
gtattctttcaaaccatcaatctaatgttcttaaagcaatatgcagttttgcactctcttgacataaacaaaatatctaacttgatctctaa-atttgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATAATTCAATTTCCATTTTCTTCTACAATGTCCTCCACC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G40050.1 (Glycine max), 3'ss of exon 9
gtattatgtcattctggaggccttgtggttagatttt---aaagcgag--gcattgcaattggcgtctttatgaaaat--tttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
||||||    ||||   |    |     | | |||||   ||||| |   |||      ||    |  |    |||||   | | |||  | | |  | | || |||| || || ||| | ||||| ||||| |||||||||||||| ||||||||||| || | |||||||||||||||||| |||||||||||||| || || |
gtattaatctattccaaatctttgagaatgaaattttttgaaagcaatctgcaccatttttccattggtagccaaaatatctaatcattgtttctgatttttgtagGGTGACAAAAATGTCATAAAATTTGACGGTGATCACAACTCGTCTCGACCACAATTCTTTTATGATTCAGTTTCCATTTTCTTCTACAATGTCCTTCACC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G00770.1 (Glycine max), 3'ss of exon 9
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
||||||  | ||||   |      |     |  |||| ||   |  |    |  ||      ||  |    |   |||| |||| ||| || | || |||| ||||| ||| | ||||| ||||| |||||||||||||| ||||| ||||| || | ||||||||||||||| || |||||||||||||| || || |
gtattaatttattccaaatttggagaatgaaattttttaaagcaatctgcaccctttttccattggtagccaaaatacc-tattcttttttttttgtagGGTGATAAAAATGTCATAAAATTTGACGGTGATCACAACTCGTCTCGGCCACAATTCTTTTATGATTCAGTTTCTATTTTCTTCTACAATGTCCTTCACC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
           | ||       ||| ||||    ||||     | ||||  ||||   | | || ||    || |  | || || |  |  || |||||||||| || ||||| || |||||||||||||||||||||||||| || || |||| ||||||||||||||| |   | ||||||||||||||||| |  |
----------gtacttacataattgcggtt----tttatgttcaagcatatcaatc--ctttttcatttttatgtacctatcttctggaa-atttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S118_125V6.1 (Physcomitrella patens), 3'ss of exon 8
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgt--ttattatg-tgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
 ||  | | | |   |  |     |   | ||||     |  |  |  ||  |  | |  |   ||||   |||| |    | |||  | |   || ||||||| ||||||||||| || ||||||||||||||||| || ||  |  |||| |||||||| ||||||||  |  | |||||||| || |||||| | |  |
ttagaaaggc-tcacgatgagtagggtatgagatcacttacaggtgtgtttaagctcgt-taagtatggccatttgaatgcaatgtgatgaacgtgatgcagGGTGATAAGAATATAATCAAGTTTGATGGTGATCATAATTCCCCAAGACCTCAGTTTTACTATGATTCCATCACGATCTTCTTTTATAATGTTTTGCGAC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ08928 (Selaginella moellendorffii), 3'ss of exon 8
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgca-attggcgtctttatgaaaattttaccatattgtt-tattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
                                                  | |  ||  ||| |||     | || || | |    ||  |  ||   |||||||| ||||| || || |||||||| || |||||||||||| |  | || ||||||||||| || |||||  |||| ||||| |||||||| || | ||
--------------------------------------------------gtatgttatcgttttttcctgagttataacttcgacttgcaaaattaccagGGAGACAAGAACATCATTAAGTTTGAGGGAGATCACAACTCTGCCAGGCCCCAGTTTTATTACGACTCAGTCACCATTTTCTTTTACAATGTGCTGCGTC

upper sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ29782 (Selaginella moellendorffii), 3'ss of exon 8
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
                                             | || |  || |   |||      |  | | ||       |  |  ||   |||||||| ||||| || || |||||||| || |||||||||||| |  | || ||||||||||| || |||||  |||| ||||| |||||||| || | ||
---------------------------------------------gtat-gttatcgttttctcctctgagttataacttggacttgcaaaattaccagGGAGACAAGAACATCATTAAGTTTGAGGGAGATCACAACTCTGCCAGGCCCCAGTTTTATTACGACTCAGTCACCATTTTCTTTTACAATGTGCTGCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcattgcaattggcgtctttatgaaaattttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC
                  tttatgaaaattttac  TA-rich tract