Sequence
atgc intronic sequence ATGC exonic sequence...agtgctaattattgctgacccaactgtcttaatatccgcagtctaattcttttcaatggaaatatcatagagttgtaagtttgctgtttgattgaaccagATCCAAAACTTCCCAGTTTGTTAAAGATGCTGATTTGGGCCCAGAACCAACTTGATGATAAAGCTGCTTATCCTCGCATAAATGATTTGTCTACTGCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0445g00060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G07570.3 (Glycine max), 3'ss of exon 6
----agtgctaatta--ttgctgacccaactgtcttaatatccgcagtctaattcttt-tcaatggaaatatcatagagttgtaagtttgctgtttgattgaaccagATCCAAAACTTCCCAGTTTGTTAAAGATGCTGATTTGGGCCCAGAACCAACTTGATGATAAAGCTGCTTATCCTCGCATAAATGATTTGTCTACTGCCAG
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ctaaactggtagaaaacttaaagtttgctctgtttcattttcaccatttgaaaaatttgctaatgggaatttggtaacattg---atcaaattttt--ttgg--cagACCCAAAACTTCCAAGCTTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTAAATGATTTATCCACCGCTAC
upper sequence: Vv00s0445g00060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G31720.1 (Glycine max), 3'ss of exon 5
agtgctaatta-ttgctgacccaactgtcttaatatccgcagtctaattcttttcaatggaaatatcatagagttgtaagtttgctgtttgattgaaccagATCCAAAACTTCCCAGTTTGTTAAAGATGCTGATTTGGGCCCAGAACCAACTTGATGATAAAGCTGCTTATCCTCGCATAAATGATTTGTCTACTGCCAG
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-atgttaaaaaactacaagtatgctcggttttattttcaccatttgaaaaatttgctaatgggctccagaatttggtaaccttgatcaatttttttggcagACCCAAAACTTCCAAGCCTGTTGAAGATGCTGCTATGCGCCCAAAACCAGCTGGATGAGAAAGCTGCTTATCCTCGTGTCAATGATCTATCCACCGCTAC
upper sequence: Vv00s0445g00060.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G61150.3 (Arabidopsis thaliana), 3'ss of exon 5
agtgctaattattgctgacccaac-tgtcttaat-atccgcagtctaattcttttcaatggaaat-atcatagagttgtaagtttgctgtttgattg-aaccagATCCAAAACTTCCCAGTTTGTTAAAGATGCTGATTTGGGCCCAGAACCAACTTGATGATAAAGCTGCTTATCCTCGCATAAATGATTTGTCTACTGCCAG
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----ttcattacttcacccacaacatgtatcatccaagttcttcttgaaactttccattttcctccatggttaatgtagcaactcaatgtttgtgaacaaacagATCCTAAACTTCCAAGCTTGTTGAAGATGTTGATTTGGGCTCAAACTCAACTGGACGAGAAAGCAGTGTATCCGCACATTAATGATTTGTCTACCGGTAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcttttcaatggaaatatcatagagttgtaagtttgctgtttgattgaaccagATCCAAAACTTCCCAGTTTGTTAAAGATGCTGATTTGGGCCCAGAACCAACTTGATGATAAAGCTGCTTATCCTCGCATAAATGATTTGTCTACTGCCAG
aaatatcata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgctaattattgctgacccaactgtcttaatatccgcagtctaattcttttcaatggaaatatcatagagttgtaagtttgctgtttgattgaaccagATCCAAAACTTCCCAGTTTGTTAAAGATGCTGATTTGGGCCCAGAACCAACTTGATGATAAAGCTGCTTATCCTCGCATAAATGATTTGTCTACTGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - attgctg
- - - - - - - - -acccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt