Sequence
atgc intronic sequence ATGC exonic sequence...tttgcatacgtggttctttgtggactatttttaataccgaagttatcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G41600.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------------------tttgca----tacgtggttctttgtggactattttta------ataccgaagttatcttcaaataggt-tcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
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gtgagttaaatgggtgattattcctgtgagcctttattggtcttttactatttttaaccgtttaagattctacatcttacaatgttacctggtgctttaacaagtacattaagagaaaacactgtttttactttttatgaagtgtattttggatttatatcatgcttctgacattgatttaaacagTGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATG
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G14990.1 (Glycine max), 3'ss of exon 3
tttgcatacgtggttctttgtggactatt--tttaatacc-gaagttatcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
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ttagggaaaagagttgtacctttcttatgcattcactgcttgtacttgttataaagtgaatttt---ggatttatatcatgcttctgacattcatgtaaacagTGGTGGCCTGGTGGATTGGGTAAAATATCCACCCATGCTGTTGCTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATG
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G04940.1 (Glycine max), 3'ss of exon 4
---tttgcatacgtggttctttgtggactatttttaataccgaagttatcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
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atttttgtatttactgtgttttaaagggtatttggctaac--aagatatcttcttgcgattactgaatattattgtaactcttt-tgatgctgatttaaacagTGGTGGCCTGGTGGATTGGGTAAAGTGTCAACACATGCCGTGGTTTATGCCCGACTAATTACTGATGGCCAAGATCATGGAGTGCATG
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G03800.1 (Glycine max), 3'ss of exon 4
-tttgcatacgtggttctttgtggactatttttaataccgaagttatcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
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tttagggaaaagagttgtacctttcttatgcatt-cactgcttctacttgttataaaataattttggatttacatcatgcttctgacattgatttaaacagTGGTGGCCTGGTGGATTGGGTAAAATATCCACCCATGCTGTTGCTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATG
upper sequence: Vv00s0389g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G16760.2 (Arabidopsis thaliana), 3'ss of exon 4
tttgcatacgtggttctttgtggactatttttaataccgaagttatcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
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-----gtaagtataccaagaagcctttgattgagtattatgcacagtttctcttggttgtgtaagattttcatctgtcttgattgt------ttgaatagTGGTGGCCTGGTGGTTTGGGAAAAGTTTCTACTCATGCTGTTGTTTACGCTCGTCTCATAACTAACGGAAAAGACTACGGTATCCATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
tttttttttttcctta CT-rich tract
ttatgatttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttgcatacgtggttctttgtggactatttttaataccgaagttatcttcaaataggttcttatgatttttttttttccttattttattattctaaatagTGGTGGCCTGGTGGACTGGGTAAAGTATCCACACATGCTGTTGTTTATGCACGGCTCATAACTGATGGTCAGGACCATGGAGTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -gcatacg
- - - - - - - - -ttgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - aaatagg