Sequence
atgc intronic sequence ATGC exonic sequence...caataccaacatcatgcactgttggaaagtagaataccttttcagggtatttaatgattctcttctcctcaatgattttgttctgttttggtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0370g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G31430.1 (Glycine max), 3'ss of exon 14
------caataccaacatcatgcactgttggaaagtagaataccttttcagggtatttaatgattctcttctcctcaatgattttgttctgttttggtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG
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ctttgtttatccctgcattttggttttactcatcttctggcatttttttaaagtaaaaagctctgactgtatctaaaataattt------gttttctctattttagGTTGAAATAGATGGCAAGGTCTTTGGTAAAGGTATTGGATTAACATGGGATGAGGCTAAAATGCAG
upper sequence: Vv00s0370g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G25010.1 (Glycine max), 3'ss of exon 14
----caataccaacatcatgc-actgttggaaagtagaataccttttcagggtatttaatgattctcttctcctcaatgattttgttctgttttggtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG
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tttttgttgctttgtttatcccggcattttggttttactcatcttctggcattttttaagctctggcagtatctaaaataatttgttatctcta-----ttttagGTCGAAATAGATGGCAAGATCTTTGGTAAAGGCATTGGATTAACATGGGATGAGGCTAAAATGCAG
upper sequence: Vv00s0370g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G07800.1 (Glycine max), 3'ss of exon 14
-caataccaacatcatgcactgttggaaagtagaataccttttcagggtatttaatgattctcttctcctcaatgattttgttctgttttggtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG
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ctattttctcttcttttttctcctacgctgtaca-tactgctttgtcctggctattttttaacaagttctgaaagttcttaaacattttctcatgttttagGTTGAAATAGATGGTCAGATCTTTGGTAAAGGGTTTGGATTAACATGGGAAGAGGCTAAAATGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708801|gb|FC060073.1|FC060073EST: AGCCTCCACTTTCATCTAACTCAACCCAGAAGGAAGAGATATGTGCTCAG GTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGAT
genomic: AGCCTCCACTTTCATCTAACTCAACCCAGAAGGAAGAGATATGTGCTCAGgtttgcactt ... gtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtatttaatgattctcttctcctcaatgattttgttctgttttggtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG
atttaat putative branch site (score: 4)
tattttt putative PPT
ttttggtattttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caataccaacatcatgcactgttggaaagtagaataccttttcagggtatttaatgattctcttctcctcaatgattttgttctgttttggtatttttagGTTGAAATAGATGGACAGGTCTTAGGGAAGGGAACTGGATCAACATGGGATGATGCTAAAATGCAG
- ataccaa
- - - - - - catgcac
- - - - - - - - - -tgttgga
- - - - - - - - - - - - - - - agaatac