Sequence
atgc intronic sequence ATGC exonic sequencegtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccctcttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0361g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G093858_T02 (Zea mays), 3'ss of exon 5
gtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttg-gaatggactccactttacctgtttattgtgtttcccctcttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
| ||| | ||| | | | | | || | | | || | | || | |||||| || | ||| | | || ||||| | |||| | || ||||||||||||||||||| ||||||| ||||||||||| | ||| || ||
---------------gtaggcacgcagtaggctcttgtgacgcag-agttcatggcatgctggcgcattgtgcttaattgatctgtttttttttttttactta--cacgcagGCTGTTCCTCCGGTAGTCCACCGCGACATCAAATCCCCCAACATTCTGCTGGACCAGGCGATGCATGCTAGG
upper sequence: Vv00s0361g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G06620.1 (Glycine max), 3'ss of exon 4
gtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccct---------cttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
|||| | || | | | || || | | || || || || | || | ||||||| | || || || | || | || || | ||||| |||| | | | ||||| ||||||||||||| ||| |||||| ||||||| || ||||||||||
gtatatagtatac-tcaaatctt---attaatgaaattggtaaatttacacgtggagaacattgaatggaataagtttactttgatttcttcgtattttcttaaaaacaactcattgcagGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAG
upper sequence: Vv00s0361g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ24591 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccctcttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
||| | || | | | ||| ||| | || || | || | | | | | | ||||| | ||| | | | || || |||||||| |||||||||||||||||||| | || | |
------------------------------gtatgatcttaaatgcg---cggttggtttctggtcgatagattgattgac--gaagatctcgatctacattgttgtgcagGCTGTGCCTCCAGTGATTCATCGAGACATCAAGTCTTCCAACATACTGCTGGATGCCATGTCCACTGCTAAA
upper sequence: Vv00s0361g00050.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ24027 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccctcttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
||| | || | | | ||| ||| | || | | || | | | | | | ||||| | ||| | | | || || |||||||| |||||||||||||||||||| | || | |
------------------------------gtatgatcttaaatgcg---cggttggtttctgg--tcgatcgattgattgacgaagatctcgatctacattgttgtgcagGCTGTGCCTCCAGTGATTCATCGAGACATCAAGTCTTCCAACATACTGCTGGATGCCATGTCCACTGCTAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttttggaatggactccactttacctgtttattgtgtttcccctcttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
tttattgtgtttcccc CT-rich tract
tgtttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccctcttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA