Sequence
atgc intronic sequence ATGC exonic sequencegtgaagatatttctcccaattagaagttattggttcttagctactggcttaaagggttttatatgaataatttctagtataaacatgatttcaattatattgaaaatcaacagGATGTGGAGGAGCTGATGAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0333g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G081380_T03 (Zea mays), 3'ss of exon 5
---gtgaagatatttctcccaattagaagttattggttcttagctactggcttaaagggttttatatgaataatttctagtataaacatgatttcaattatattgaaaatcaacagGATGTGGAGGAGCTGATGAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACT
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gtagtatata-atttctcttcatt-----ctactatgttttcaagactatttca----gtctgacatggaaaagaact--cattgccaaagctacgagtgctc-----attg-cagGAGATGGAGGAGCTTATGAGTTTATCTCCTGAAAAGATTCTACTAAGGTGGATGAACTTTCAACTGAAGAAAGCAGGTTTCCAGAAAAGAGTAACAAATT
upper sequence: Vv00s0333g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G22450.1 (Glycine max), 3'ss of exon 7
gtgaagatatttctcccaattagaagttattggttcttagctactggcttaaagggttttatatgaataatttctagtataaacatgatttcaattatattgaaaatcaacagGATGTGGAGGAGCTGATGAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACT
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----------------------gtaaatattt-tctttcgtcatctcttcata----tttccattaattattgtatatgttgtcttcattt--atttttttttaaattaacagGATATGGAAGAGTTGATGAATCTACCCCCAGAAAAAATCTTGTTAAGGTGGATGAATTTCCATTTGAAGAAAGCAGGGTACAAGAAGATTGTCACTAACT
upper sequence: Vv00s0333g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G48460.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgaagatatttctcccaat-tagaagttattggttcttagctactggcttaaagggttttatatgaataatttctagtataaacatgatttcaattatattgaaaatcaacagGATGTGGAGGAGCTGATGAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACT
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gtacatactactcactcattgtctagattcctgttggttaagtgaaacattaaaaggacagatttt--ttaattaaaattttgactttgttataact---tttgggattaacagGATGTGGAAGAGCTAATGAGTTTACCACCTGAGAAGATCTTATTGAGATGGATGAATTTTCAGTTGAGAAAAACTGAATACAAGAAAACCGTCACAAACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatatgaataatttctagtataaacatgatttcaattatattgaaaatcaacagGATGTGGAGGAGCTGATGAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACT
aataatttctagtata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaagatatttctcccaattagaagttattggttcttagctactggcttaaagggttttatatgaataatttctagtataaacatgatttcaattatattgaaaatcaacagGATGTGGAGGAGCTGATGAGTCTACCACCAGAGAAGATCTTACTTCGGTGGATGAATTTTCAACTGAAGAAAGCAGGATATAAGAGAATAGTTACAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA