1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaatattttaatttttcccacttaggtgcttgaatttttgagtcagtagttttagttggtaatggccccaacttaacactttgtggaatcaccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATTTGCAGAGAAAAATTGCGGATGAATTGGACAGAACTCCAGGGGAGATAC
species | Vitis vinifera |
transcript | Vv00s0317g00100.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAG GATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATEST: gi|110388643|gb|EC953416.1|EC953416
genomic: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAGgtgaactctt ... caccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
EST: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAG GATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATEST: gi|32245762|gb|CD711581.1|CD711581
genomic: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAGgtgaactctt ... caccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
EST: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAG GATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATEST: gi|32269988|gb|CD719147.1|CD719147
genomic: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAGgtgaactctt ... caccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
EST: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAG GATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATEST: gi|30327867|gb|CD011129.1|CD011129
genomic: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAGgtgaactctt ... caccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
EST: TGTGTGGAAGAGATCACATGGCTGACAGATCTGCTTATTTTCCTGTTAAG GATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATEST: gi|27582226|gb|CB004921.1|CB004921
genomic: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAGgtgaactctt ... caccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
EST: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAG GATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
genomic: TGTGTGGAAGAGATCACATGGCTTACAGATCTGCTTATTTTCCTGTTAAGgtgaactctt ... caccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGAT
agtagttttagttggtaatggccccaacttaacactttgtggaatcaccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATTTGCAGAGAAAAATTGCGGATGAATTGGACAGAACTCCAGGGGAGATAC
acttaac putative branch site (score: 3)
tcaccct putative PPT
ttttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaatattttaatttttcccacttaggtgcttgaatttttgagtcagtagttttagttggtaatggccccaacttaacactttgtggaatcaccctgcagGATGTGATTGATGGGGATCTATGTGAGCAGTTTCCTACACTGCCTCTGGATTTGCAGAGAAAAATTGCGGATGAATTGGACAGAACTCCAGGGGAGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - -ttcccac
- - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tagttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgga