Sequence
atgc intronic sequence ATGC exonic sequence...accatcatgcatgagcatgtgccctatgtcttcttttcatcaagtaaatggcatatatagtggttgcattatggcctctagaaaaagtttgtgcatgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAAGGCTACAACACTCAAACTCAAACTAAGGACGACCGTCTGTCAGAGGCAGAGACCGACGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0317g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G108723_T01 (Zea mays), 3'ss of exon 2
--------------------------------------------------------------------accatcatgcatgagcat---gtgccctatgtcttcttttcatcaagtaaatggcatat-atagtggttgcattatggcctct---------agaaaaagtttg-----tgcatgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAAGGCTACAACACTCAAACTCA--AACTAAGGACGACCGTCT-GTCAGAGGCAGAGACCGACGA
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gtaccggccgtactaccgtgcatatatactggacacgcgcacgcgttatgctttccttcccccgttcaaccatttctcgtttaccttccatgcataatatgcttcaataatcgatcatagattatattgttgttgttctattctatcatttcatgtggtctgaaaaagcacaccacatgcatgcagTGTGGAAGGAGCTAGAGAAAGAGAACAAGGAGTTCTTCGAGACGTACAACAAGGACCGCGAGGAGCGGAAGGTGGAGGCGGAGACGATGGCGCGGATCGA---
upper sequence: Vv00s0317g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G55240.1 (Arabidopsis thaliana), 3'ss of exon 2
---accatcatgcatgagcatgtgccctatgtcttcttttcatcaagtaaatggcatatatagtggttgcattatggcctctagaaaaagtttgtgcatgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAAGGCTACAACACTCAAACTCAAACTAAGGACGACCGTCTGTCAGAGGCAGAGACCGACGA---
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aaaaaagccaaagaaaatataaaaatccttgcaacatatatatccggcctatatattttgttatcataatattaatgaattggaacaaaataaatg---acagTGTGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAAGGCGTATGAGG---AGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatggcatatatagtggttgcattatggcctctagaaaaagtttgtgcatgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAAGGCTACAACACTCAAACTCAAACTAAGGACGACCGTCTGTCAGAGGCAGAGACCGACGA
atatatagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
accatcatgcatgagcatgtgccctatgtcttcttttcatcaagtaaatggcatatatagtggttgcattatggcctctagaaaaagtttgtgcatgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAAGGCTACAACACTCAAACTCAAACTAAGGACGACCGTCTGTCAGAGGCAGAGACCGACGA
- - tcatgca
- - - - - - gagcatg
- - - - - - - - - -tgcccta
- - - - - - - - - - - - - tgtcttc
- - - - - - - - - - - - - - - - - - - - -aagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa