Sequence
atgc intronic sequence ATGC exonic sequencegttagctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAGGCCTACCATACTCAAACCCAAACCAGAGATGACAGAATGTCAGAGGCTGAGACAAACGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G10620.1 (Glycine max), 3'ss of exon 2
-gttagctcctttagatcatgcacgaatctctctctatgtgtttg-cctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAGGCCTACCATACTCAAACCCAAACCAGAGATGACAGAATGTCAGAGGCTGAGACAAACGA---
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aaatatcagggtcacctt-tctatgaaccacagaacatgtatatatccgtacgtttgaatgaat--atatcgt-gtaccatatttataatgaa---tatgtgtgcagTGTGGAACGAGCTAGAGAAAGAAAACAAGGAGTTTTTTGAGG---AGTATGCCAAAGCCAAGAGTAAGGACGAACGAATGTCGGAGGAAGAGACAAGCCAAAT
upper sequence: Vv00s0317g00020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G55240.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAGGCCTACCATACTCAAACCCAAACCAGAGATGACAGAATGTCAGAGGCTGAGACAAACGA---
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-aaaaaagccaaagaaaatataaaaatc-cttgcaacatatatatccg--gcctatatattttgttatcataatattaatgaattggaacaaaataaatg-acagTGTGGAAGGAGCTGGAGAAAGAGAACAAGGAATTCTTCAAGGCGTATGAGG---AGAGGCAAAGCAAACAAGAGCAAATGTCGGAGGAAGAGACAAACCAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAGGCCTACCATACTCAAACCCAAACCAGAGATGACAGAATGTCAGAGGCTGAGACAAACGA
acataac putative branch site (score: 3)
taatatttttgtataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagctcctttagatcatgcacgaatctctctctatgtgtttgcctttcgttcacataactccgtacggtcgtaatatttttgtataaaaatttatgtgtgcagTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAGGCCTACCATACTCAAACCCAAACCAGAGATGACAGAATGTCAGAGGCTGAGACAAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG