Sequence
atgc intronic sequence ATGC exonic sequence...tataacacttgatacatcactgaacaaacaccttggtctttatttacatgatacttttgaataccgcaatccaataataaggccttatttatttttatagCTGATAGACAAGCTCTCTGTTAGAACCCCCATGGGTGAAGTAAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0302g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G22850.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------tataacacttgatacatcactg--aacaaacaccttggtctttattta--catgatacttttgaataccgcaatccaataataaggccttatttatttttatagCTGATAGACAAGCTCTCTGTTAGAACCCCCATGGGTGAAGTAAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTG
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gtaagcctatttctgactgccatttttcttgtatttgcttacaaaaaagcagccttttggattttgatgcttgcttgtcagtaaactacttaatttctattaatccacaacaagtattcatactagtgttgca-aatgggaatgaattt-------tagTTGATTGAAAAGCTCTCAGTACGAACACCACCGGGTGAAGTAAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCAAATTGATTGGGATACTACAG
upper sequence: Vv00s0302g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G04900.1 (Glycine max), 3'ss of exon 4
---------------------------------------------------------------tataacacttgatacatcactg--aacaaacaccttggtctttatttacatgatacttttgaataccgcaatccaataataaggccttatttatttttatagCTGATAGACAAGCTCTCTGTTAGAACCCCCATGGGTGAAGTAAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTG
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gtaagcctttttctgactgcaatttagcttgtatttgcttacaaagaagcagccttttggatttttggattttgatgcttgattgtcagtaaactacttaatttctattaat-------cctcaagtatt-catactagtgttgtgaatggccatgaatttttagTTGATCGAAAAGCTCTCAGTACGAACACCACCTGGTGAAGTAAAATTGAAAGTGTTGAAGGAAATAGCTAAGGAACATCATATTGATTGGGATACTACAG
upper sequence: Vv00s0302g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G35730.1 (Arabidopsis thaliana), 3'ss of exon 4
--tataacacttgatacatcactgaacaaac-accttggtctttattta--catgatacttttgaataccgcaatccaataataaggccttatttatttttatagCTGATAGACAAGCTCTCTGTTAGAACCCCCATGGGTGAAGTAAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTG
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gtaactaaatcattcatgtttctgattagtctaacttgaactgtgattcgtttttagatgcaagatgaaatcgaacttgttttcttctttcttgtgcgtttgtagTTGATTGATAAGCTTTCGGTTAGAAATCCCGGTGGAGAATACAAACTGAAAATCATGAAGGAAATTGCAAAGGAATTCCAGGTTGATTGGGATACTACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acatgatacttttgaataccgcaatccaataataaggccttatttatttttatagCTGATAGACAAGCTCTCTGTTAGAACCCCCATGGGTGAAGTAAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTG
ccttatttattttt CT-rich tract
aataataaggccttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tataacacttgatacatcactgaacaaacaccttggtctttatttacatgatacttttgaataccgcaatccaataataaggccttatttatttttatagCTGATAGACAAGCTCTCTGTTAGAACCCCCATGGGTGAAGTAAAGTTGAAAGTCATGAAGGAAATAGCAAAGGAATACCAGATCGAATGGGATACAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
-ataacac
- - - - - - - catcact
- - - - - - - - - - - - -aaacacc
- - - - - - - - - - - - - - - - - - - - - -ttacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataagg